PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85851-85900 / 86044 show all
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7607
99.5225
100.0000
46.7518
14597145900
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8769
99.7950
99.9589
49.0692
24345243410
0.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9684
100.0000
99.9367
49.1803
15800158010
0.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7078
99.4172
100.0000
48.8609
853585300
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
98.1787
97.7376
98.6239
91.0177
216521532
66.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.3309
96.7105
97.9592
91.2343
147514432
66.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
90.5333
6907100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.0344
98.9969
99.0719
86.7371
1283131281129
75.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.9423
99.0599
98.8249
87.6792
8438841108
80.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2090
98.8739
99.5465
84.4225
439543921
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1395
99.1848
99.0942
85.7787
109591094108
80.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.1682
99.4444
98.8935
86.9353
716471587
87.5000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0826
98.6945
99.4737
82.8674
378537821
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6468
99.5944
99.6992
79.9741
66302766282011
55.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.6224
99.6697
99.5753
80.0565
42241442201810
55.5556
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.4545
20200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6890
99.4621
99.9169
79.7698
240413240621
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6481
99.5697
99.7266
69.7354
31009134310078534
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
90.9774
1201200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7622
99.7519
99.7725
68.8442
4825124825117
63.6364
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7460
99.8094
99.6827
70.4841
314263142106
60.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
91.6667
10100
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7923
99.6445
99.9406
65.1625
16826168211
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200*
93.3333
87.5000
100.0000
97.8788
1421400
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200het
88.8889
80.0000
100.0000
98.3193
82800
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
60600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9043
99.9521
44.5722
62626626233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.8637
100.0000
42.6858
21983219800
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.8882
99.8789
99.8975
38.7986
107191310717115
45.4545
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200*
95.5224
95.0495
96.0000
93.4037
9659643
75.0000