PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83601-83650 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 38.4615 | 0.0000 | 0.0000 | 5 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | homalt | 87.4215 | 80.5158 | 95.6229 | 85.7759 | 281 | 68 | 284 | 13 | 12 | 92.3077 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | * | 83.4201 | 85.3893 | 81.5397 | 87.6090 | 976 | 167 | 985 | 223 | 82 | 36.7713 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | het | 82.1558 | 88.4817 | 76.6741 | 87.9456 | 676 | 88 | 687 | 209 | 69 | 33.0144 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.6855 | 81.0440 | 95.5128 | 86.5285 | 295 | 69 | 298 | 14 | 13 | 92.8571 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | * | 83.4613 | 85.4797 | 81.5359 | 87.6226 | 989 | 168 | 998 | 226 | 83 | 36.7257 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | het | 82.1373 | 88.5714 | 76.5746 | 87.9814 | 682 | 88 | 693 | 212 | 70 | 33.0189 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | homalt | 87.8083 | 81.1828 | 95.6113 | 86.4773 | 302 | 70 | 305 | 14 | 13 | 92.8571 | |
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | * | 78.5978 | 78.8927 | 78.3051 | 93.2168 | 228 | 61 | 231 | 64 | 29 | 45.3125 | |
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | het | 78.2898 | 82.6733 | 74.3478 | 93.3870 | 167 | 35 | 171 | 59 | 25 | 42.3729 | |
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.2389 | 69.4118 | 92.3077 | 92.5373 | 59 | 26 | 60 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | * | 81.6618 | 83.6820 | 79.7368 | 89.6132 | 600 | 117 | 606 | 154 | 60 | 38.9610 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | het | 80.6909 | 87.9668 | 74.5267 | 89.8052 | 424 | 58 | 433 | 148 | 55 | 37.1622 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 3 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | homalt | 85.0123 | 75.8772 | 96.6480 | 88.9370 | 173 | 55 | 173 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | * | 82.1745 | 84.1415 | 80.2974 | 90.0210 | 642 | 121 | 648 | 159 | 63 | 39.6226 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | het | 81.1800 | 88.1323 | 75.2443 | 90.1933 | 453 | 61 | 462 | 152 | 57 | 37.5000 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 3 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.5172 | 76.8595 | 96.3731 | 89.4304 | 186 | 56 | 186 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | * | 82.1438 | 84.1902 | 80.1944 | 89.9891 | 655 | 123 | 660 | 163 | 64 | 39.2638 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | het | 81.1378 | 88.3142 | 75.0400 | 90.1683 | 461 | 61 | 469 | 156 | 58 | 37.1795 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.6502 | 77.0161 | 96.4646 | 89.3777 | 191 | 57 | 191 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | * | 66.7485 | 69.5652 | 64.1509 | 98.1232 | 32 | 14 | 34 | 19 | 9 | 47.3684 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | het | 70.3504 | 81.8182 | 61.7021 | 97.9322 | 27 | 6 | 29 | 18 | 8 | 44.4444 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | homalt | 52.6316 | 38.4615 | 83.3333 | 98.9111 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | * | 72.2457 | 74.2690 | 70.3297 | 96.0219 | 127 | 44 | 128 | 54 | 24 | 44.4444 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | het | 72.2766 | 81.9820 | 64.6259 | 95.9781 | 91 | 20 | 95 | 52 | 22 | 42.3077 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | homalt | 73.0707 | 59.6491 | 94.2857 | 96.1957 | 34 | 23 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | * | 72.9497 | 74.4565 | 71.5026 | 96.2008 | 137 | 47 | 138 | 55 | 24 | 43.6364 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | het | 72.6137 | 80.9917 | 65.8065 | 96.1529 | 98 | 23 | 102 | 53 | 22 | 41.5094 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.3844 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | * | 72.7100 | 74.5946 | 70.9184 | 96.2235 | 138 | 47 | 139 | 57 | 24 | 42.1053 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | het | 72.2986 | 81.1475 | 65.1899 | 96.1529 | 99 | 23 | 103 | 55 | 22 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_siren | * | 87.4723 | 88.4103 | 86.5539 | 80.0641 | 3120 | 409 | 3122 | 485 | 188 | 38.7629 | |
| anovak-vg | INDEL | D1_5 | map_siren | het | 86.2774 | 89.9868 | 82.8617 | 80.2332 | 2049 | 228 | 2079 | 430 | 142 | 33.0233 | |
| anovak-vg | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 27 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_siren | homalt | 92.1020 | 89.3836 | 94.9909 | 79.6667 | 1044 | 124 | 1043 | 55 | 46 | 83.6364 | |
| anovak-vg | INDEL | D1_5 | segdup | * | 91.5860 | 90.4805 | 92.7189 | 94.7590 | 998 | 105 | 1006 | 79 | 52 | 65.8228 | |
| anovak-vg | INDEL | D1_5 | segdup | het | 93.3306 | 94.0751 | 92.5978 | 95.1126 | 651 | 41 | 663 | 53 | 34 | 64.1509 | |
| anovak-vg | INDEL | D1_5 | segdup | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdup | homalt | 93.5483 | 94.1504 | 92.9539 | 93.9028 | 338 | 21 | 343 | 26 | 18 | 69.2308 | |