PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1951-2000 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | segdup | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 9 | 36 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | segdup | homalt | 59.8909 | 80.8511 | 47.5610 | 87.6506 | 38 | 9 | 39 | 43 | 42 | 97.6744 | |
| anovak-vg | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | tech_badpromoters | * | 57.1429 | 46.1538 | 75.0000 | 50.0000 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | tech_badpromoters | het | 25.0000 | 14.2857 | 100.0000 | 40.0000 | 1 | 6 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | tech_badpromoters | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | tech_badpromoters | homalt | 75.0000 | 100.0000 | 60.0000 | 54.5455 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | * | * | * | 99.3424 | 99.2404 | 99.4446 | 59.9126 | 341925 | 2617 | 341788 | 1909 | 1550 | 81.1943 | |
| astatham-gatk | INDEL | * | * | het | 99.5127 | 99.4973 | 99.5281 | 60.7701 | 193157 | 976 | 192779 | 914 | 573 | 62.6915 | |
| astatham-gatk | INDEL | * | * | hetalt | 96.8001 | 94.0563 | 99.7088 | 58.1664 | 23737 | 1500 | 23968 | 70 | 69 | 98.5714 | |
| astatham-gatk | INDEL | * | * | homalt | 99.5755 | 99.8874 | 99.2657 | 58.8575 | 125031 | 141 | 125041 | 925 | 908 | 98.1622 | |
| astatham-gatk | INDEL | * | HG002complexvar | * | 99.4827 | 99.2916 | 99.6745 | 58.3541 | 76393 | 545 | 76257 | 249 | 212 | 85.1406 | |
| astatham-gatk | INDEL | * | HG002complexvar | het | 99.5588 | 99.3119 | 99.8070 | 57.7885 | 45894 | 318 | 45516 | 88 | 55 | 62.5000 | |
| astatham-gatk | INDEL | * | HG002complexvar | hetalt | 96.3890 | 94.5391 | 98.3127 | 68.6296 | 3497 | 202 | 3729 | 64 | 63 | 98.4375 | |
| astatham-gatk | INDEL | * | HG002complexvar | homalt | 99.7747 | 99.9075 | 99.6422 | 57.3610 | 27002 | 25 | 27012 | 97 | 94 | 96.9072 | |
| astatham-gatk | INDEL | * | HG002compoundhet | * | 95.0088 | 94.7931 | 95.2256 | 62.9264 | 28400 | 1560 | 28282 | 1418 | 1407 | 99.2243 | |
| astatham-gatk | INDEL | * | HG002compoundhet | het | 93.2853 | 98.3879 | 88.6859 | 79.4067 | 4028 | 66 | 3786 | 483 | 475 | 98.3437 | |
| astatham-gatk | INDEL | * | HG002compoundhet | hetalt | 96.8345 | 94.0747 | 99.7612 | 51.5025 | 23688 | 1492 | 23812 | 57 | 56 | 98.2456 | |
| astatham-gatk | INDEL | * | HG002compoundhet | homalt | 60.8541 | 99.7085 | 43.7900 | 84.6320 | 684 | 2 | 684 | 878 | 876 | 99.7722 | |
| astatham-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9347 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9426 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8374 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | func_cds | * | 99.5531 | 99.7753 | 99.3318 | 44.9080 | 444 | 1 | 446 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | * | func_cds | het | 99.5392 | 100.0000 | 99.0826 | 50.0000 | 214 | 0 | 216 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 38.4824 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9849 | 94.4009 | 95.5762 | 69.0899 | 9509 | 564 | 9355 | 433 | 393 | 90.7621 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4126 | 96.9059 | 93.9646 | 79.4691 | 3915 | 125 | 3612 | 232 | 195 | 84.0517 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9775 | 89.0167 | 99.5238 | 40.0705 | 3404 | 420 | 3553 | 17 | 17 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5706 | 99.1399 | 92.2494 | 66.0177 | 2190 | 19 | 2190 | 184 | 181 | 98.3696 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3816 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4222 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5305 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1675 | 99.0429 | 99.2924 | 73.5960 | 93545 | 904 | 93452 | 666 | 582 | 87.3874 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3786 | 99.4717 | 99.2856 | 75.6401 | 48016 | 255 | 47805 | 344 | 267 | 77.6163 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7545 | 95.9460 | 99.6325 | 60.1730 | 14792 | 625 | 14910 | 55 | 54 | 98.1818 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.9220 | 99.1388 | 74.4236 | 30737 | 24 | 30737 | 267 | 261 | 97.7528 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6446 | 98.9272 | 98.3637 | 73.5579 | 30153 | 327 | 29696 | 494 | 401 | 81.1741 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0426 | 94.5944 | 99.6209 | 40.6185 | 15802 | 903 | 16029 | 61 | 60 | 98.3607 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7705 | 99.7193 | 97.8396 | 67.4095 | 18115 | 51 | 18115 | 400 | 388 | 97.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8091 | 97.3562 | 98.2662 | 76.6111 | 2099 | 57 | 2097 | 37 | 20 | 54.0541 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8006 | 97.5318 | 98.0707 | 78.8291 | 1225 | 31 | 1220 | 24 | 7 | 29.1667 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2907 | 87.4251 | 100.0000 | 68.6975 | 146 | 21 | 149 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7788 | 99.3179 | 98.2456 | 73.2684 | 728 | 5 | 728 | 13 | 13 | 100.0000 | |