PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83701-83750 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | * | 75.2577 | 93.5897 | 62.9310 | 97.7692 | 73 | 5 | 73 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | het | 69.3878 | 96.2264 | 54.2553 | 97.9008 | 51 | 2 | 51 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 96.9529 | 22 | 3 | 22 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | * | 82.3699 | 93.4426 | 73.6434 | 96.1257 | 285 | 20 | 285 | 102 | 15 | 14.7059 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | het | 77.8894 | 96.8421 | 65.1408 | 96.6811 | 184 | 6 | 185 | 99 | 13 | 13.1313 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | homalt | 94.3396 | 91.7431 | 97.0874 | 92.8073 | 100 | 9 | 100 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | * | 83.4899 | 93.9577 | 75.1208 | 96.3544 | 311 | 20 | 311 | 103 | 15 | 14.5631 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | het | 79.4528 | 97.1429 | 67.2131 | 96.8634 | 204 | 6 | 205 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | homalt | 94.6429 | 92.1739 | 97.2477 | 93.3211 | 106 | 9 | 106 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | * | 83.5781 | 93.9940 | 75.2404 | 96.4341 | 313 | 20 | 313 | 103 | 15 | 14.5631 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | het | 79.5322 | 97.1564 | 67.3203 | 96.9369 | 205 | 6 | 206 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | homalt | 94.6903 | 92.2414 | 97.2727 | 93.4368 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_siren | * | 91.0727 | 92.5911 | 89.6032 | 84.7790 | 6861 | 549 | 6843 | 794 | 423 | 53.2746 | |
| gduggal-bwavard | INDEL | * | map_siren | het | 90.9729 | 98.0035 | 84.8835 | 87.6032 | 4418 | 90 | 4408 | 785 | 417 | 53.1210 | |
| gduggal-bwavard | INDEL | * | map_siren | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_siren | homalt | 95.6313 | 91.9397 | 99.6318 | 70.4973 | 2441 | 214 | 2435 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | INDEL | * | segdup | * | 89.7413 | 89.8670 | 89.6160 | 95.3552 | 2297 | 259 | 2287 | 265 | 217 | 81.8868 | |
| gduggal-bwavard | INDEL | * | segdup | het | 90.5367 | 97.4761 | 84.5196 | 96.2639 | 1429 | 37 | 1425 | 261 | 213 | 81.6092 | |
| gduggal-bwavard | INDEL | * | segdup | hetalt | 0.0000 | 0.7692 | 0.0000 | 0.0000 | 1 | 129 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | segdup | homalt | 94.7011 | 90.3125 | 99.5381 | 91.1777 | 867 | 93 | 862 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9978 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | tech_badpromoters | * | 77.1889 | 76.3158 | 78.0822 | 58.7571 | 58 | 18 | 57 | 16 | 15 | 93.7500 | |
| gduggal-bwavard | INDEL | * | tech_badpromoters | het | 81.7204 | 97.4359 | 70.3704 | 60.0000 | 38 | 1 | 38 | 16 | 15 | 93.7500 | |
| gduggal-bwavard | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | tech_badpromoters | homalt | 75.4717 | 60.6061 | 100.0000 | 54.7619 | 20 | 13 | 19 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | * | * | 98.8646 | 98.0471 | 99.6958 | 26.6546 | 2994965 | 59654 | 2995523 | 9139 | 1314 | 14.3779 | |
| gduggal-bwaplat | SNP | * | * | het | 98.8209 | 98.1336 | 99.5179 | 30.8495 | 1838619 | 34968 | 1839500 | 8912 | 1113 | 12.4888 | |
| gduggal-bwaplat | SNP | * | * | hetalt | 95.9084 | 92.8817 | 99.1390 | 56.6631 | 809 | 62 | 806 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | SNP | * | * | homalt | 98.9364 | 97.9135 | 99.9810 | 18.7279 | 1155537 | 24624 | 1155217 | 220 | 194 | 88.1818 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | * | 97.7797 | 96.6309 | 98.9561 | 21.4247 | 728965 | 25416 | 729516 | 7696 | 1060 | 13.7734 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | het | 97.5069 | 96.6621 | 98.3666 | 21.6545 | 449959 | 15538 | 450835 | 7486 | 872 | 11.6484 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | homalt | 98.2316 | 96.5943 | 99.9253 | 21.0137 | 278746 | 9828 | 278424 | 208 | 186 | 89.4231 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | * | 88.4972 | 90.4035 | 86.6696 | 48.3543 | 23344 | 2478 | 23445 | 3606 | 414 | 11.4809 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | het | 83.0864 | 88.0801 | 78.6286 | 53.0695 | 12488 | 1690 | 12671 | 3444 | 265 | 7.6945 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | HG002compoundhet | homalt | 95.7606 | 93.2573 | 98.4021 | 40.3893 | 10055 | 727 | 9976 | 162 | 149 | 91.9753 | |
| gduggal-bwaplat | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | func_cds | * | 99.4779 | 99.2121 | 99.7452 | 34.2475 | 18007 | 143 | 18007 | 46 | 4 | 8.6957 | |
| gduggal-bwaplat | SNP | * | func_cds | het | 99.4076 | 99.2295 | 99.5864 | 39.9773 | 11075 | 86 | 11075 | 46 | 4 | 8.6957 | |