PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
651-700 / 86044 show all
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9336
98.0047
99.8804
84.7751
8351783511
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1238
98.4538
99.8029
79.4946
10634167106342112
57.1429
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8422
97.9805
99.7191
81.0931
674413967441910
52.6316
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.6829
30300
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5109
97.3461
99.7039
72.1148
27950762279508324
28.9157
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.6071
1501500
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6662
99.3697
99.9644
66.5145
168681071686866
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.1948
98.5039
99.8954
68.1029
95471459547109
90.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
98.9155
97.9955
99.8529
70.5060
6111125611198
88.8889
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.6953
99.4211
99.9709
62.6075
343520343511
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
97.5610
95.2381
100.0000
97.3009
4024000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
96.1538
92.5926
100.0000
97.7558
2522500
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9016
1501500
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.5088
99.0743
99.9471
55.8025
170181591701596
66.6667
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3053
98.6647
99.9543
56.5280
109361481093352
40.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8767
99.8193
99.9342
54.4187
607711607744
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5556
99.1696
99.9446
40.0259
1803215118029102
20.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.3358
98.7667
99.9115
42.6185
1129214111289102
20.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200*
95.0000
93.0070
97.0803
92.6620
1331013343
75.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200het
95.5665
95.0980
96.0396
92.5296
9759743
75.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.5065
87.8049
100.0000
93.0097
3653600
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4603
98.9667
99.9588
33.4796
727976727532
66.6667
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2363
98.5269
99.9560
35.0014
454868454421
50.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8537
99.7443
99.9634
30.7478
27317273111
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.8525
90900
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.0704
70700
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.3333
20200
astatham-gatkSNP*map_l100_m0_e0*
92.7245
86.6569
99.7057
72.7426
284594382284558435
41.6667
astatham-gatkSNP*map_l100_m0_e0het
88.7308
80.0000
99.6007
77.5238
169644241169606823
33.8235
astatham-gatkSNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
68.0000
1601600
astatham-gatkSNP*map_l100_m0_e0homalt
99.3208
98.7866
99.8608
60.2139
11479141114791612
75.0000