PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2251-2300 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 12 | 0 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 18.1818 | 100.0000 | 10.0000 | 54.4592 | 24 | 0 | 24 | 216 | 151 | 69.9074 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | homalt | 93.9581 | 97.7759 | 90.4272 | 60.3886 | 1143 | 26 | 1143 | 121 | 72 | 59.5041 | |
| ndellapenna-hhga | INDEL | D6_15 | * | homalt | 95.9125 | 97.7395 | 94.1526 | 53.1263 | 6183 | 143 | 6183 | 384 | 166 | 43.2292 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.2939 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.8075 | 58 | 2 | 58 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.6445 | 58 | 2 | 58 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.0412 | 55 | 2 | 55 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.3684 | 12 | 1 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7903 | 98.7903 | 98.7903 | 87.8491 | 245 | 3 | 245 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 87.9077 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.1425 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0604 | 99.1935 | 98.9276 | 85.4807 | 369 | 3 | 369 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 86.5876 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.9525 | 99.0323 | 98.8728 | 82.5169 | 614 | 6 | 614 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.9370 | 99.0180 | 98.8562 | 82.4087 | 605 | 6 | 605 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.9030 | 98.9865 | 98.8196 | 81.4803 | 586 | 6 | 586 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 83.0013 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 43.4783 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1754 | 99.4737 | 98.8789 | 38.7923 | 1323 | 7 | 1323 | 15 | 13 | 86.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1637 | 95.4315 | 96.9072 | 51.1335 | 188 | 9 | 188 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8001 | 98.8271 | 98.7732 | 47.1774 | 3623 | 43 | 3623 | 45 | 33 | 73.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7349 | 99.8133 | 99.6566 | 54.0176 | 10159 | 19 | 10157 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.8511 | 80.2817 | 81.4286 | 43.5484 | 57 | 14 | 57 | 13 | 11 | 84.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.1705 | 96.3571 | 95.9846 | 35.8391 | 6983 | 264 | 6980 | 292 | 133 | 45.5479 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.0365 | 96.2201 | 95.8537 | 59.0186 | 8044 | 316 | 8045 | 348 | 182 | 52.2989 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3994 | 95.4409 | 95.3578 | 49.7393 | 5422 | 259 | 5423 | 264 | 128 | 48.4848 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.3132 | 95.4134 | 95.2131 | 38.5261 | 4535 | 218 | 4535 | 228 | 107 | 46.9298 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.0800 | 95.1730 | 94.9873 | 39.7320 | 4870 | 247 | 4870 | 257 | 123 | 47.8599 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2061 | 92.0844 | 92.3280 | 55.4245 | 349 | 30 | 349 | 29 | 16 | 55.1724 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6387 | 98.1030 | 99.1803 | 79.0977 | 362 | 7 | 363 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5536 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8753 | 98.4496 | 97.3077 | 64.2857 | 254 | 4 | 253 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.0365 | 96.2201 | 95.8537 | 59.0186 | 8044 | 316 | 8045 | 348 | 182 | 52.2989 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.3782 | 98.4839 | 98.2727 | 72.8894 | 21567 | 332 | 21563 | 379 | 204 | 53.8259 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5633 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2193 | 94.2819 | 94.1567 | 58.3748 | 709 | 43 | 709 | 44 | 28 | 63.6364 | |