PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2101-2150 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 15 | 0 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 18.3051 | 87.0968 | 10.2273 | 63.1285 | 27 | 4 | 27 | 237 | 215 | 90.7173 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | homalt | 96.3193 | 96.9522 | 95.6946 | 54.2209 | 1177 | 37 | 1178 | 53 | 36 | 67.9245 | |
| ndellapenna-hhga | INDEL | I6_15 | * | homalt | 96.8456 | 97.9163 | 95.7981 | 48.3646 | 6109 | 130 | 6110 | 268 | 230 | 85.8209 | |
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 61.7647 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | segdup | homalt | 99.3684 | 99.7886 | 98.9518 | 92.7375 | 472 | 1 | 472 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_siren | homalt | 99.2574 | 99.2574 | 99.2574 | 77.6960 | 1203 | 9 | 1203 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.3603 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.2965 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.4030 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1061 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9840 | 203 | 1 | 203 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.8031 | 200 | 1 | 200 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.1548 | 197 | 1 | 197 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.5714 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 85.2297 | 341 | 2 | 341 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.9406 | 339 | 2 | 339 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.4507 | 326 | 1 | 326 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.7059 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.0741 | 99.0741 | 99.0741 | 82.5186 | 535 | 5 | 535 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1517 | 99.0584 | 99.2453 | 82.4212 | 526 | 5 | 526 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.1304 | 99.0347 | 99.2263 | 80.8802 | 513 | 5 | 513 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 79.8279 | 207 | 1 | 207 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.1175 | 97.7528 | 98.4848 | 61.9048 | 261 | 6 | 260 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 2 | 2 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5480 | 98.7793 | 98.3178 | 63.7657 | 1052 | 13 | 1052 | 18 | 14 | 77.7778 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7020 | 98.3471 | 99.0596 | 62.1590 | 952 | 16 | 948 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2543 | 95.9220 | 96.5889 | 67.3888 | 541 | 23 | 538 | 19 | 9 | 47.3684 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.0658 | 96.3042 | 97.8396 | 70.2140 | 3622 | 139 | 3623 | 80 | 65 | 81.2500 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.7368 | 93.2088 | 96.3158 | 71.7892 | 1098 | 80 | 1098 | 42 | 35 | 83.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.7050 | 91.2434 | 96.3031 | 57.7013 | 521 | 50 | 521 | 20 | 16 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.3441 | 90.1387 | 94.6602 | 59.6342 | 585 | 64 | 585 | 33 | 29 | 87.8788 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9816 | 80.4878 | 81.4815 | 72.4490 | 66 | 16 | 66 | 15 | 14 | 93.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.7974 | 96.2428 | 99.4030 | 77.3801 | 333 | 13 | 333 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0973 | 97.0711 | 99.1453 | 74.0433 | 464 | 14 | 464 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.5124 | 98.0000 | 97.0297 | 66.3894 | 196 | 4 | 196 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.0658 | 96.3042 | 97.8396 | 70.2140 | 3622 | 139 | 3623 | 80 | 65 | 81.2500 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6068 | 96.9183 | 98.3051 | 69.3951 | 3428 | 109 | 3422 | 59 | 39 | 66.1017 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5795 | 92.5795 | 92.5795 | 69.2391 | 262 | 21 | 262 | 21 | 19 | 90.4762 | |