PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83701-83750 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | * | 93.4813 | 91.1488 | 95.9364 | 78.9527 | 19844 | 1927 | 19855 | 841 | 482 | 57.3127 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | * | 95.7091 | 94.2918 | 97.1698 | 74.6083 | 45195 | 2736 | 45216 | 1317 | 683 | 51.8603 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | * | 95.7724 | 94.3751 | 97.2116 | 76.1299 | 46207 | 2754 | 46228 | 1326 | 687 | 51.8100 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | * | 95.8022 | 94.4145 | 97.2313 | 76.1409 | 46721 | 2764 | 46742 | 1331 | 691 | 51.9159 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | * | 91.6685 | 88.4893 | 95.0846 | 83.9409 | 11293 | 1469 | 11297 | 584 | 340 | 58.2192 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | * | 94.1774 | 92.2277 | 96.2113 | 79.7747 | 27055 | 2280 | 27070 | 1066 | 586 | 54.9719 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e0 | * | 94.3195 | 92.4218 | 96.2968 | 81.1125 | 27965 | 2293 | 27980 | 1076 | 588 | 54.6468 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | * | 94.3667 | 92.4859 | 96.3257 | 81.1411 | 28272 | 2297 | 28287 | 1079 | 590 | 54.6803 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | * | 90.2459 | 86.2613 | 94.6165 | 87.8341 | 6781 | 1080 | 6784 | 386 | 225 | 58.2902 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | * | 92.9132 | 90.4018 | 95.5681 | 83.3799 | 17820 | 1892 | 17833 | 827 | 469 | 56.7110 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e0 | * | 93.1515 | 90.7274 | 95.7087 | 84.4902 | 18610 | 1902 | 18623 | 835 | 473 | 56.6467 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e1 | * | 93.1844 | 90.7639 | 95.7375 | 84.5444 | 18809 | 1914 | 18822 | 838 | 476 | 56.8019 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | * | 85.2021 | 77.7372 | 94.2529 | 96.3701 | 1065 | 305 | 1066 | 65 | 29 | 44.6154 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | * | 88.1520 | 82.9439 | 94.0579 | 93.4361 | 3798 | 781 | 3799 | 240 | 126 | 52.5000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | * | 88.7392 | 83.8658 | 94.2139 | 93.6830 | 4200 | 808 | 4201 | 258 | 136 | 52.7132 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | * | 88.7551 | 83.8849 | 94.2257 | 93.7237 | 4258 | 818 | 4259 | 261 | 138 | 52.8736 | |
| gduggal-snapplat | SNP | ti | map_siren | * | 97.1306 | 96.0829 | 98.2013 | 65.7243 | 96424 | 3931 | 96473 | 1767 | 855 | 48.3871 | |
| gduggal-snapplat | SNP | ti | segdup | * | 99.0792 | 98.8483 | 99.3111 | 92.8755 | 19312 | 225 | 19317 | 134 | 17 | 12.6866 | |
| gduggal-snapplat | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 61.3953 | 79 | 6 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | * | * | 98.6169 | 98.1754 | 99.0623 | 31.7051 | 952005 | 17693 | 952368 | 9015 | 1026 | 11.3810 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | * | 97.5342 | 96.7281 | 98.3538 | 26.8142 | 238101 | 8054 | 238450 | 3991 | 673 | 16.8629 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | * | 81.2573 | 87.2016 | 76.0717 | 63.0432 | 7781 | 1142 | 7808 | 2456 | 275 | 11.1971 | |
| gduggal-snapplat | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | func_cds | * | 99.2890 | 99.0391 | 99.5401 | 39.3276 | 4329 | 42 | 4329 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 78.3315 | 84.6966 | 72.8563 | 89.5793 | 1284 | 232 | 1283 | 478 | 11 | 2.3013 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.8609 | 77.5453 | 93.7004 | 78.4378 | 21463 | 6215 | 21508 | 1446 | 158 | 10.9267 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.0910 | 79.0543 | 85.3704 | 89.9548 | 11519 | 3052 | 11560 | 1981 | 144 | 7.2691 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.3269 | 91.2425 | 80.1316 | 82.4013 | 1219 | 117 | 1218 | 302 | 5 | 1.6556 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2077 | 80.0368 | 76.4603 | 79.5968 | 1740 | 434 | 1741 | 536 | 6 | 1.1194 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 77.8419 | 75.4167 | 80.4284 | 80.2278 | 1086 | 354 | 1089 | 265 | 3 | 1.1321 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.6069 | 35.1515 | 27.1028 | 96.8469 | 58 | 107 | 58 | 156 | 7 | 4.4872 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.6981 | 52.4613 | 52.9371 | 95.3580 | 746 | 676 | 757 | 673 | 56 | 8.3210 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.7555 | 54.6245 | 56.9343 | 95.0071 | 691 | 574 | 702 | 531 | 51 | 9.6045 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 71.9561 | 72.9860 | 70.9549 | 92.4413 | 3026 | 1120 | 3039 | 1244 | 64 | 5.1447 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 82.0910 | 79.0543 | 85.3704 | 89.9548 | 11519 | 3052 | 11560 | 1981 | 144 | 7.2691 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.1231 | 74.0733 | 84.9119 | 84.9242 | 3597 | 1259 | 3613 | 642 | 94 | 14.6417 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.4324 | 84.8960 | 99.0592 | 66.8074 | 9263 | 1648 | 9266 | 88 | 18 | 20.4545 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.2213 | 71.4171 | 94.1457 | 64.2321 | 5322 | 2130 | 5339 | 332 | 30 | 9.0361 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 34.7826 | 47.6190 | 27.3973 | 95.0441 | 20 | 22 | 20 | 53 | 3 | 5.6604 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.9810 | 69.4783 | 97.0481 | 57.6686 | 2397 | 1053 | 2400 | 73 | 9 | 12.3288 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 31.0345 | 97.8582 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |