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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2451-2500 / 86044 show all
bgallagher-sentieonSNPtimap_l150_m1_e0*
99.1792
99.3202
99.0387
75.5864
195781341957419036
18.9474
bgallagher-sentieonSNPtimap_l150_m2_e0*
99.1869
99.3321
99.0422
77.0287
203751372037119737
18.7817
bgallagher-sentieonSNPtimap_l150_m2_e1*
99.1904
99.3389
99.0424
77.0978
205861372058219937
18.5930
bgallagher-sentieonSNPtimap_l250_m0_e0*
98.1132
98.6861
97.5469
93.1376
1352181352347
20.5882
bgallagher-sentieonSNPtimap_l250_m1_e0*
98.5526
98.8862
98.2213
89.0457
45285145288219
23.1707
bgallagher-sentieonSNPtimap_l250_m2_e0*
98.6664
98.9816
98.3532
89.5470
49575149578319
22.8916
bgallagher-sentieonSNPtimap_l250_m2_e1*
98.6646
98.9756
98.3555
89.6132
50245250248419
22.6190
bgallagher-sentieonSNPtimap_siren*
99.6181
99.6801
99.5561
54.0168
10003432110001944666
14.7982
bgallagher-sentieonSNPtisegdup*
99.5103
99.8567
99.1663
89.5899
1950928195071646
3.6585
bgallagher-sentieonSNPtisegdupwithalt*
0.0000
100.0000
00000
bgallagher-sentieonSNPtitech_badpromoters*
98.2249
97.6471
98.8095
45.0980
8328311
100.0000
bgallagher-sentieonSNPtv**
99.8908
99.9655
99.8163
21.9055
969355335969269178478
4.3722
bgallagher-sentieonSNPtvHG002complexvar*
99.9492
99.9313
99.9671
22.0213
2459831692458928131
38.2716
bgallagher-sentieonSNPtvHG002compoundhet*
99.7142
99.7422
99.6862
48.7920
89002388952811
39.2857
bgallagher-sentieonSNPtvdecoy*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvfunc_cds*
99.8287
100.0000
99.6579
29.0453
437104370150
0.0000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3053
99.0106
99.6019
68.7862
150115150161
16.6667
bgallagher-sentieonSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4994
99.8555
99.1459
64.4153
27638402762823820
8.4034
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.1996
99.5127
98.8884
74.7272
14500711450016314
8.5890
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5122
99.2515
99.7743
48.6278
132610132630
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7244
99.8620
99.5872
63.6182
21713217190
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6883
99.9306
99.4471
68.6661
14391143980
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.5610
96.9697
98.1595
91.0734
160516031
33.3333
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3312
99.2264
99.4362
88.4220
141111141187
87.5000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4462
99.3676
99.5249
88.0409
12578125766
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4691
99.4211
99.5171
82.2582
4122244122207
35.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1996
99.5127
98.8884
74.7272
14500711450016314
8.5890
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7013
99.6705
99.7321
66.3966
48401648401310
76.9231
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200*
98.0392
96.1538
100.0000
96.7866
2512500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9129
99.8992
99.9266
60.1913
10900111089685
62.5000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.6738
99.8792
97.4971
38.9618
7443974401913
1.5707
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3939
4114110
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6672
99.8841
99.4512
37.3053
344643443192
10.5263
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
bgallagher-sentieonSNPtvmap_l100_m0_e0*
98.9757
99.3865
98.5682
71.0162
11016681101516025
15.6250
bgallagher-sentieonSNPtvmap_l100_m1_e0*
99.3526
99.5959
99.1104
66.8404
24402992439821931
14.1553
bgallagher-sentieonSNPtvmap_l100_m2_e0*
99.3603
99.6045
99.1174
68.4796
24934992493022231
13.9640
bgallagher-sentieonSNPtvmap_l100_m2_e1*
99.3647
99.6084
99.1222
68.5080
25184992518022331
13.9013
bgallagher-sentieonSNPtvmap_l125_m0_e0*
98.6421
99.1555
98.1340
76.7581
657556657412519
15.2000
bgallagher-sentieonSNPtvmap_l125_m1_e0*
99.1503
99.4630
98.8396
71.8727
15930861592818728
14.9733
bgallagher-sentieonSNPtvmap_l125_m2_e0*
99.1716
99.4784
98.8667
73.4826
16403861640118828
14.8936
bgallagher-sentieonSNPtvmap_l125_m2_e1*
99.1800
99.4837
98.8781
73.5318
16571861656918828
14.8936
bgallagher-sentieonSNPtvmap_l150_m0_e0*
98.4884
99.1375
97.8477
81.2755
41383641379110
10.9890
bgallagher-sentieonSNPtvmap_l150_m1_e0*
98.9592
99.3402
98.5810
76.0604
10840721083815625
16.0256
bgallagher-sentieonSNPtvmap_l150_m2_e0*
98.9822
99.3659
98.6015
77.4624
11283721128116025
15.6250