PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84251-84300 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.4469 | 99.5112 | 99.3827 | 62.5253 | 3868 | 19 | 3864 | 24 | 9 | 37.5000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2657 | 99.6737 | 96.8970 | 47.8485 | 2749 | 9 | 2748 | 88 | 17 | 19.3182 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 33.3333 | 66.6667 | 22.2222 | 92.5620 | 4 | 2 | 4 | 14 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.7189 | 99.8474 | 97.6155 | 43.1356 | 1309 | 2 | 1310 | 32 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 79.5455 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | homalt | 97.1883 | 95.2678 | 99.1879 | 78.6252 | 3664 | 182 | 3664 | 30 | 6 | 20.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | homalt | 98.3618 | 97.2686 | 99.4798 | 71.8035 | 8796 | 247 | 8797 | 46 | 9 | 19.5652 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | homalt | 98.3869 | 97.3084 | 99.4896 | 73.1420 | 8966 | 248 | 8967 | 46 | 9 | 19.5652 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | homalt | 98.4024 | 97.3339 | 99.4946 | 73.1383 | 9054 | 248 | 9055 | 46 | 9 | 19.5652 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | homalt | 96.2107 | 93.7416 | 98.8135 | 84.7573 | 2082 | 139 | 2082 | 25 | 6 | 24.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | homalt | 97.7782 | 96.1263 | 99.4878 | 77.1149 | 5633 | 227 | 5633 | 29 | 7 | 24.1379 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | homalt | 97.8112 | 96.1775 | 99.5014 | 78.2474 | 5787 | 230 | 5787 | 29 | 7 | 24.1379 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | homalt | 97.8321 | 96.2134 | 99.5062 | 78.2651 | 5844 | 230 | 5844 | 29 | 7 | 24.1379 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | homalt | 95.3524 | 92.6958 | 98.1659 | 89.1785 | 1231 | 97 | 1231 | 23 | 5 | 21.7391 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | homalt | 97.1916 | 95.1597 | 99.3122 | 81.5059 | 3755 | 191 | 3754 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | homalt | 97.2621 | 95.2731 | 99.3359 | 82.3744 | 3890 | 193 | 3889 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | homalt | 97.2966 | 95.3314 | 99.3444 | 82.3553 | 3941 | 193 | 3940 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | homalt | 94.7644 | 93.7824 | 95.7672 | 97.4314 | 181 | 12 | 181 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | homalt | 95.8509 | 93.1075 | 98.7608 | 93.4160 | 797 | 59 | 797 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | homalt | 95.9430 | 93.3831 | 98.6471 | 93.4664 | 875 | 62 | 875 | 12 | 5 | 41.6667 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | homalt | 95.8740 | 93.3404 | 98.5491 | 93.5115 | 883 | 63 | 883 | 13 | 5 | 38.4615 | |
| gduggal-snapfb | SNP | tv | map_siren | homalt | 98.9049 | 98.2309 | 99.5884 | 65.8705 | 16935 | 305 | 16935 | 70 | 12 | 17.1429 | |
| gduggal-snapfb | SNP | tv | segdup | homalt | 99.3840 | 99.6603 | 99.1093 | 91.8109 | 3227 | 11 | 3227 | 29 | 8 | 27.5862 | |
| gduggal-snapfb | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | tech_badpromoters | homalt | 95.1220 | 100.0000 | 90.6977 | 67.1756 | 39 | 0 | 39 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | * | * | homalt | 81.6385 | 73.6219 | 91.6144 | 63.4553 | 92154 | 33018 | 99397 | 9098 | 3079 | 33.8426 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | homalt | 81.8252 | 74.5588 | 90.6609 | 60.0040 | 20151 | 6876 | 21619 | 2227 | 779 | 34.9798 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | homalt | 27.3298 | 63.4111 | 17.4185 | 67.5742 | 435 | 251 | 668 | 3167 | 2730 | 86.2015 | |
| gduggal-snapplat | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9779 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | func_cds | homalt | 81.6523 | 71.6814 | 94.8454 | 31.4488 | 162 | 64 | 184 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 40.1642 | 32.5939 | 52.3148 | 73.3785 | 720 | 1489 | 904 | 824 | 648 | 78.6408 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9274 | 0 | 5 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 75.2906 | 65.9666 | 87.6843 | 78.0956 | 20292 | 10469 | 23253 | 3266 | 1977 | 60.5328 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 57.4173 | 46.1301 | 76.0173 | 74.8627 | 8380 | 9786 | 10368 | 3271 | 2260 | 69.0920 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 56.9333 | 42.2920 | 87.0801 | 78.6542 | 310 | 423 | 337 | 50 | 17 | 34.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9251 | 0 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 50.4391 | 35.8961 | 84.7921 | 83.3242 | 677 | 1209 | 775 | 139 | 23 | 16.5468 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 48.9268 | 34.4420 | 84.4376 | 85.3796 | 466 | 887 | 548 | 101 | 12 | 11.8812 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 32.9974 | 26.9036 | 42.6601 | 71.8368 | 318 | 864 | 433 | 582 | 472 | 81.0997 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.5876 | 52.6310 | 71.3784 | 62.8612 | 5011 | 4510 | 6504 | 2608 | 1963 | 75.2684 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.1957 | 56.1798 | 74.8799 | 61.8437 | 4700 | 3666 | 6078 | 2039 | 1497 | 73.4183 | |
| gduggal-snapplat | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | * | homalt | 55.1666 | 41.1476 | 83.6743 | 63.6351 | 2603 | 3723 | 2168 | 423 | 248 | 58.6288 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | homalt | 52.8983 | 39.9487 | 78.2700 | 68.0162 | 467 | 702 | 371 | 103 | 66 | 64.0777 | |