PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
151-200 / 86044 show all
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8558
99.8558
99.8558
64.1880
13852138521
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8619
99.8160
99.9079
64.2822
21704217021
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8959
99.7921
100.0000
53.7572
480148000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6495
99.7661
99.5333
55.1309
853285341
25.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.7381
99.7754
99.7008
54.7087
13333133341
25.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7694
99.7050
99.8338
75.7174
540716540792
22.2222
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.4197
99.4416
99.3979
75.9193
90825190805515
27.2727
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8811
99.8613
99.9009
61.7921
100831410083102
20.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
81.2500
1211200
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8491
99.8406
99.8576
65.2848
1754028175272517
68.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8590
99.8446
99.8734
64.1005
2763543276223519
54.2857
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
66.9401
522252221
50.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.3435
99.1935
99.4939
70.5690
984898351
20.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.4386
99.3404
99.5370
69.4360
150610150572
28.5714
rpoplin-dv42SNPtvfunc_cdshomalt
99.9706
99.9413
100.0000
27.8695
17031170300
rpoplin-dv42SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
60.0000
1001000
rpoplin-dv42SNPtvfunc_cdshet
99.8871
99.9247
99.8495
30.5098
26552265441
25.0000
rpoplin-dv42SNPtvfunc_cds*
99.9199
99.9314
99.9085
29.6249
43683436741
25.0000
rpoplin-dv42SNPtvdecoyhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvdecoyhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvdecoyhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvdecoy*
0.0000
100.0000
00000
rpoplin-dv42SNPtvHG002compoundhethomalt
99.7491
99.8229
99.6753
42.8668
338263377119
81.8182
rpoplin-dv42SNPtvHG002compoundhethetalt
99.9420
99.8840
100.0000
22.1519
861186100
rpoplin-dv42SNPtvHG002compoundhethet
99.5284
99.3794
99.6779
54.5836
46442946421510
66.6667
rpoplin-dv42SNPtvHG002compoundhet*
99.6523
99.5965
99.7081
48.4905
88873688802619
73.0769
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439
rpoplin-dv42SNPtvHG002complexvarhetalt
99.1974
99.6774
98.7220
36.2525
309130944
100.0000
rpoplin-dv42SNPtvHG002complexvarhet
99.8928
99.8249
99.9608
21.2882
1504672641503825946
77.9661
rpoplin-dv42SNPtvHG002complexvar*
99.9096
99.8615
99.9577
21.9240
24581134124570210487
83.6538
rpoplin-dv42SNPtv*homalt
99.9702
99.9650
99.9753
20.9652
3769911323769709351
54.8387
rpoplin-dv42SNPtv*hetalt
99.4854
99.8852
99.0888
49.8858
870187088
100.0000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
rpoplin-dv42SNPtv**
99.9512
99.9420
99.9604
21.8980
969128562969027384163
42.4479
rpoplin-dv42SNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
46.1538
4104111
100.0000
rpoplin-dv42SNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtitech_badpromotershet
98.8506
97.7273
100.0000
44.1558
4314300
rpoplin-dv42SNPtitech_badpromoters*
98.8235
98.8235
98.8235
45.1613
8418411
100.0000