PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
1-50 / 86044 show all
anovak-vgINDEL**hetalt
0.0000
25.9341
0.0000
0.0000
654518692000
anovak-vgINDEL*HG002complexvarhetalt
0.0000
29.8459
0.0000
0.0000
11042595000
anovak-vgINDEL*HG002compoundhethetalt
0.0000
25.9095
0.0000
0.0000
652418656000
anovak-vgINDEL*decoy*
67.7419
60.0000
77.7778
99.9553
64720
0.0000
anovak-vgINDEL*decoyhet
72.7273
66.6667
80.0000
99.9643
42410
0.0000
anovak-vgINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDEL*decoyhomalt
70.5882
66.6667
75.0000
99.9345
21310
0.0000
anovak-vgINDEL*func_cdshetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
13.6768
0.0000
0.0000
5233301000
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
28.1118
0.0000
0.0000
433411083000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
25.3457
0.0000
0.0000
423412471000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
23.9521
0.0000
0.0000
40127000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
30.9013
0.0000
0.0000
72161000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
34.8485
0.0000
0.0000
4686000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
13.4043
0.0000
0.0000
3652358000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.8095
21100
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3871
20100
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
24.8474
0.0000
0.0000
342010344000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
27.5552
0.0000
0.0000
30608045000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
24.8860
0.0000
0.0000
349210540000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
25.3457
0.0000
0.0000
423412471000
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
27.5800
0.0000
0.0000
28897586000
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
7.1086
0.0000
0.0000
891163000
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
24.4860
0.0000
0.0000
131404000
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
6.2500
0.0000
0.0000
115000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
30.4251
0.0000
0.0000
8161866000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
14.8954
0.0000
0.0000
1781017000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
38.7866
0.0000
0.0000
358565000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
13.6000
0.0000
0.0000
17108000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDEL*map_l100_m0_e0hetalt
0.0000
36.3636
0.0000
0.0000
1221000
anovak-vgINDEL*map_l100_m1_e0hetalt
0.0000
25.8065
0.0000
0.0000
3292000
anovak-vgINDEL*map_l100_m2_e0hetalt
0.0000
26.4000
0.0000
0.0000
3392000
anovak-vgINDEL*map_l100_m2_e1hetalt
0.0000
26.5152
0.0000
0.0000
3597000
anovak-vgINDEL*map_l125_m0_e0hetalt
0.0000
36.3636
0.0000
0.0000
47000
anovak-vgINDEL*map_l125_m1_e0hetalt
0.0000
37.5000
0.0000
0.0000
1525000
anovak-vgINDEL*map_l125_m2_e0hetalt
0.0000
35.7143
0.0000
0.0000
1527000
anovak-vgINDEL*map_l125_m2_e1hetalt
0.0000
34.8837
0.0000
0.0000
1528000
anovak-vgINDEL*map_l150_m0_e0hetalt
0.0000
33.3333
0.0000
0.0000
36000