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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1-34 / 34 | |||||||||||||||
mlin-fermikit | SNP | * | func_cds | * | 99.4453 | 99.2617 | 99.6295 | 19.0809 | 18016 | 134 | 18016 | 67 | 48 | 71.6418 | |
ckim-isaac | SNP | * | func_cds | * | 99.4183 | 98.8760 | 99.9666 | 20.1352 | 17946 | 204 | 17946 | 6 | 2 | 33.3333 | |
ltrigg-rtg2 | SNP | * | func_cds | * | 99.6865 | 99.8678 | 99.5059 | 22.3605 | 18126 | 24 | 18125 | 90 | 1 | 1.1111 | |
ltrigg-rtg1 | SNP | * | func_cds | * | 99.6647 | 99.8898 | 99.4405 | 22.8252 | 18130 | 20 | 18129 | 102 | 1 | 0.9804 | |
hfeng-pmm1 | SNP | * | func_cds | * | 99.9366 | 99.9614 | 99.9119 | 23.2953 | 18143 | 7 | 18140 | 16 | 0 | 0.0000 | |
jli-custom | SNP | * | func_cds | * | 99.9036 | 99.9559 | 99.8514 | 23.3699 | 18142 | 8 | 18142 | 27 | 0 | 0.0000 | |
raldana-dualsentieon | SNP | * | func_cds | * | 99.8926 | 99.9614 | 99.8239 | 23.4025 | 18143 | 7 | 18140 | 32 | 0 | 0.0000 | |
hfeng-pmm3 | SNP | * | func_cds | * | 99.9367 | 99.9669 | 99.9064 | 23.5356 | 18144 | 6 | 18141 | 17 | 0 | 0.0000 | |
ndellapenna-hhga | SNP | * | func_cds | * | 99.9367 | 99.9614 | 99.9119 | 23.5700 | 18143 | 7 | 18143 | 16 | 0 | 0.0000 | |
egarrison-hhga | SNP | * | func_cds | * | 99.9477 | 99.9725 | 99.9229 | 23.9159 | 18145 | 5 | 18145 | 14 | 0 | 0.0000 | |
bgallagher-sentieon | SNP | * | func_cds | * | 99.8899 | 99.9669 | 99.8129 | 24.1761 | 18144 | 6 | 18141 | 34 | 0 | 0.0000 | |
hfeng-pmm2 | SNP | * | func_cds | * | 99.9174 | 99.9780 | 99.8569 | 24.2548 | 18146 | 4 | 18143 | 26 | 0 | 0.0000 | |
astatham-gatk | SNP | * | func_cds | * | 99.8621 | 99.7796 | 99.9448 | 24.2600 | 18110 | 40 | 18107 | 10 | 0 | 0.0000 | |
rpoplin-dv42 | SNP | * | func_cds | * | 99.9366 | 99.9449 | 99.9284 | 24.7263 | 18140 | 10 | 18137 | 13 | 3 | 23.0769 | |
dgrover-gatk | SNP | * | func_cds | * | 99.9284 | 99.9614 | 99.8954 | 24.8199 | 18143 | 7 | 18140 | 19 | 0 | 0.0000 | |
ciseli-custom | SNP | * | func_cds | * | 97.9137 | 99.4601 | 96.4146 | 25.6110 | 18052 | 98 | 17990 | 669 | 42 | 6.2780 | |
eyeh-varpipe | SNP | * | func_cds | * | 98.2084 | 99.9669 | 96.5106 | 26.4105 | 18144 | 6 | 17950 | 649 | 1 | 0.1541 | |
cchapple-custom | SNP | * | func_cds | * | 99.7855 | 99.9174 | 99.6539 | 26.7611 | 18135 | 15 | 18142 | 63 | 1 | 1.5873 | |
gduggal-snapfb | SNP | * | func_cds | * | 99.6978 | 99.9614 | 99.4355 | 28.3431 | 18143 | 7 | 18143 | 103 | 2 | 1.9418 | |
qzeng-custom | SNP | * | func_cds | * | 99.7598 | 99.8182 | 99.7016 | 28.7413 | 18117 | 33 | 18040 | 54 | 4 | 7.4074 | |
jpowers-varprowl | SNP | * | func_cds | * | 99.3809 | 99.4931 | 99.2689 | 29.1793 | 18058 | 92 | 18058 | 133 | 14 | 10.5263 | |
gduggal-snapvard | SNP | * | func_cds | * | 99.3360 | 99.0138 | 99.6603 | 29.3432 | 17971 | 179 | 17895 | 61 | 23 | 37.7049 | |
anovak-vg | SNP | * | func_cds | * | 98.5581 | 98.0331 | 99.0887 | 29.8522 | 17793 | 357 | 17724 | 163 | 111 | 68.0982 | |
asubramanian-gatk | SNP | * | func_cds | * | 99.6470 | 99.5537 | 99.7405 | 30.0602 | 18069 | 81 | 18066 | 47 | 1 | 2.1277 | |
gduggal-bwafb | SNP | * | func_cds | * | 99.6211 | 99.9504 | 99.2939 | 30.1552 | 18141 | 9 | 18141 | 129 | 2 | 1.5504 | |
gduggal-bwavard | SNP | * | func_cds | * | 99.3111 | 98.9862 | 99.6380 | 30.1556 | 17966 | 184 | 17892 | 65 | 23 | 35.3846 | |
ckim-dragen | SNP | * | func_cds | * | 99.5474 | 99.9669 | 99.1313 | 30.5099 | 18144 | 6 | 18144 | 159 | 1 | 0.6289 | |
ghariani-varprowl | SNP | * | func_cds | * | 99.5441 | 99.8512 | 99.2389 | 30.8362 | 18123 | 27 | 18123 | 139 | 14 | 10.0719 | |
ckim-gatk | SNP | * | func_cds | * | 99.6618 | 99.8678 | 99.4567 | 31.5863 | 18126 | 24 | 18123 | 99 | 1 | 1.0101 | |
jlack-gatk | SNP | * | func_cds | * | 99.3020 | 99.9614 | 98.6513 | 31.6355 | 18143 | 7 | 18140 | 248 | 1 | 0.4032 | |
ckim-vqsr | SNP | * | func_cds | * | 99.7574 | 99.7080 | 99.8069 | 31.6969 | 18097 | 53 | 18094 | 35 | 0 | 0.0000 | |
gduggal-snapplat | SNP | * | func_cds | * | 99.4703 | 99.3223 | 99.6187 | 31.7106 | 18027 | 123 | 18027 | 69 | 5 | 7.2464 | |
jmaeng-gatk | SNP | * | func_cds | * | 99.4513 | 99.8678 | 99.0382 | 31.9360 | 18126 | 24 | 18123 | 176 | 1 | 0.5682 | |
gduggal-bwaplat | SNP | * | func_cds | * | 99.4779 | 99.2121 | 99.7452 | 34.2475 | 18007 | 143 | 18007 | 46 | 4 | 8.6957 |