PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
651-700 / 86044 show all | |||||||||||||||
raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | het | 98.3750 | 98.3640 | 98.3860 | 76.8948 | 4329 | 72 | 4328 | 71 | 1 | 1.4085 | |
raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | * | 98.7925 | 98.7181 | 98.8671 | 74.3082 | 6546 | 85 | 6545 | 75 | 3 | 4.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | homalt | 99.8494 | 99.7635 | 99.9354 | 60.9109 | 9280 | 22 | 9280 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | het | 99.1544 | 99.3412 | 98.9684 | 69.6842 | 15833 | 105 | 15829 | 165 | 1 | 0.6061 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | * | 99.4052 | 99.4898 | 99.3207 | 66.9624 | 25154 | 129 | 25150 | 172 | 5 | 2.9070 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.8479 | 99.7612 | 99.9348 | 60.9327 | 9192 | 22 | 9192 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | het | 99.1552 | 99.3345 | 98.9766 | 69.6214 | 15672 | 105 | 15668 | 162 | 1 | 0.6173 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | * | 99.4052 | 99.4847 | 99.3259 | 66.9200 | 24904 | 129 | 24900 | 169 | 5 | 2.9586 | |
raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.8450 | 99.7567 | 99.9335 | 58.3702 | 9021 | 22 | 9021 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | hetalt | 96.2963 | 95.1220 | 97.5000 | 65.5172 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | het | 99.1452 | 99.3189 | 98.9720 | 68.0652 | 15312 | 105 | 15308 | 159 | 1 | 0.6289 | |
raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | * | 99.3984 | 99.4735 | 99.3234 | 65.0677 | 24372 | 129 | 24368 | 166 | 5 | 3.0121 | |
raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 59.9142 | 3829 | 17 | 3829 | 4 | 2 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | het | 98.8033 | 98.8923 | 98.7144 | 71.7057 | 7142 | 80 | 7141 | 93 | 1 | 1.0753 | |
raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | * | 99.1204 | 99.1249 | 99.1158 | 68.4908 | 10987 | 97 | 10986 | 98 | 4 | 4.0816 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.6480 | 1309 | 2 | 1309 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1057 | 98.5033 | 99.7155 | 36.0522 | 2106 | 32 | 2103 | 6 | 2 | 33.3333 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4032 | 98.9855 | 99.8245 | 35.5338 | 3415 | 35 | 3412 | 6 | 2 | 33.3333 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 91.1111 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.4959 | 23 | 13 | 23 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9819 | 99.9637 | 100.0000 | 35.9582 | 2757 | 1 | 2757 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5286 | 98.5711 | 98.4861 | 38.0204 | 4622 | 67 | 4619 | 71 | 0 | 0.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0674 | 99.0875 | 99.0472 | 37.3044 | 7384 | 68 | 7381 | 71 | 0 | 0.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9614 | 99.9743 | 99.9486 | 59.3220 | 3886 | 1 | 3886 | 2 | 2 | 100.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7358 | 99.5014 | 99.9714 | 60.2855 | 6984 | 35 | 6981 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.6701 | 99.9632 | 59.9499 | 10875 | 36 | 10872 | 4 | 3 | 75.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.3216 | 8 | 1 | 8 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 97.4239 | 11 | 6 | 11 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.4444 | 73.0769 | 100.0000 | 96.8333 | 19 | 7 | 19 | 0 | 0 |