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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1703 1704 1705 1706 1707 1708 1709 1710 1711 ... 1720 1721 » 85301-85350 / 86044 show all
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7691	99.9184	99.6202	33.3544	7349	6	7345	28	3	10.7143
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6756	99.9350	99.4176	34.7502	4613	3	4609	27	2	7.4074
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	30.8140	2736	2	2736	1	1	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	95.7143	9	0	9	0	0
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	94.8529	7	0	7	0	0
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	97.2973	2	0	2	0	0
bgallagher-sentieon	SNP	*	map_l100_m0_e0	*	99.1340	99.3545	98.9146	69.7273	32629	212	32625	358	60	16.7598
bgallagher-sentieon	SNP	*	map_l100_m0_e0	het	98.8545	99.3162	98.3971	73.2385	21060	145	21056	343	49	14.2857
bgallagher-sentieon	SNP	*	map_l100_m0_e0	hetalt	96.7742	93.7500	100.0000	68.7500	15	1	15	0	0
bgallagher-sentieon	SNP	*	map_l100_m0_e0	homalt	99.6507	99.4320	99.8703	60.0283	11554	66	11554	15	11	73.3333
bgallagher-sentieon	SNP	*	map_l100_m1_e0	*	99.4317	99.5636	99.3001	65.4224	72087	316	72076	508	81	15.9449
bgallagher-sentieon	SNP	*	map_l100_m1_e0	het	99.2217	99.5084	98.9366	68.7750	45136	223	45125	485	63	12.9897
bgallagher-sentieon	SNP	*	map_l100_m1_e0	hetalt	97.5000	95.1220	100.0000	70.4545	39	2	39	0	0
bgallagher-sentieon	SNP	*	map_l100_m1_e0	homalt	99.7886	99.6630	99.9146	57.7258	26912	91	26912	23	18	78.2609
bgallagher-sentieon	SNP	*	map_l100_m2_e0	*	99.4275	99.5674	99.2880	67.0766	73644	320	73633	528	81	15.3409
bgallagher-sentieon	SNP	*	map_l100_m2_e0	het	99.2145	99.5129	98.9179	70.0977	46173	226	46162	505	63	12.4752
bgallagher-sentieon	SNP	*	map_l100_m2_e0	hetalt	97.5610	95.2381	100.0000	72.7891	40	2	40	0	0
bgallagher-sentieon	SNP	*	map_l100_m2_e0	homalt	99.7908	99.6657	99.9162	60.2352	27431	92	27431	23	18	78.2609
bgallagher-sentieon	SNP	*	map_l100_m2_e1	*	99.4314	99.5705	99.2927	67.0857	74416	321	74405	530	81	15.2830
bgallagher-sentieon	SNP	*	map_l100_m2_e1	het	99.2207	99.5181	98.9251	70.1134	46672	226	46661	507	63	12.4260
bgallagher-sentieon	SNP	*	map_l100_m2_e1	hetalt	97.6190	95.3488	100.0000	72.2973	41	2	41	0	0
bgallagher-sentieon	SNP	*	map_l100_m2_e1	homalt	99.7911	99.6654	99.9170	60.2187	27703	93	27703	23	18	78.2609
bgallagher-sentieon	SNP	*	map_l125_m0_e0	*	98.8636	99.1953	98.5342	75.8607	19229	156	19226	286	50	17.4825
bgallagher-sentieon	SNP	*	map_l125_m0_e0	het	98.5131	99.1551	97.8793	78.7667	12557	107	12554	272	40	14.7059
bgallagher-sentieon	SNP	*	map_l125_m0_e0	hetalt	94.1176	88.8889	100.0000	77.1429	8	1	8	0	0
bgallagher-sentieon	SNP	*	map_l125_m0_e0	homalt	99.5370	99.2849	99.7904	67.2503	6664	48	6664	14	10	71.4286
bgallagher-sentieon	SNP	*	map_l125_m1_e0	*	99.2644	99.4418	99.0876	71.3529	45074	253	45068	415	70	16.8675
bgallagher-sentieon	SNP	*	map_l125_m1_e0	het	98.9928	99.3695	98.6190	74.6006	28213	179	28207	395	55	13.9241
bgallagher-sentieon	SNP	*	map_l125_m1_e0	hetalt	96.5517	93.3333	100.0000	71.4286	28	2	28	0	0
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	*	99.2735	99.4499	99.0978	72.9518	46466	257	46460	423	70	16.5485
bgallagher-sentieon	SNP	*	map_l125_m2_e0	het	99.0076	99.3826	98.6355	75.8378	29137	181	29131	403	55	13.6476
bgallagher-sentieon	SNP	*	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	76.0684	28	2	28	0	0
bgallagher-sentieon	SNP	*	map_l125_m2_e0	homalt	99.7291	99.5741	99.8845	66.0253	17301	74	17301	20	15	75.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e1	*	99.2798	99.4555	99.1048	72.9953	46945	257	46939	424	70	16.5094
astatham-gatk	SNP	*	*	*	99.5934	99.2091	99.9807	19.0428	3030461	24158	3030315	584	162	27.7397
astatham-gatk	SNP	*	*	het	99.3521	98.7393	99.9725	20.1637	1849967	23620	1849845	508	95	18.7008
astatham-gatk	SNP	*	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
astatham-gatk	SNP	*	*	homalt	99.9742	99.9548	99.9936	17.1971	1179627	534	1179603	76	67	88.1579
astatham-gatk	SNP	*	HG002complexvar	*	99.1835	98.3938	99.9860	19.2643	742264	12117	742112	104	62	59.6154
astatham-gatk	SNP	*	HG002complexvar	het	98.7010	97.4496	99.9850	18.8713	453625	11872	453498	68	28	41.1765
astatham-gatk	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
astatham-gatk	SNP	*	HG002complexvar	homalt	99.9516	99.9158	99.9875	19.8527	288331	243	288306	36	34	94.4444
astatham-gatk	SNP	*	HG002compoundhet	*	99.2284	98.6058	99.8588	41.2826	25462	360	25455	36	34	94.4444
astatham-gatk	SNP	*	HG002compoundhet	het	98.6981	97.5878	99.8340	46.2177	13836	342	13834	23	22	95.6522
astatham-gatk	SNP	*	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4932	858	4	858	0	0

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