PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85251-85300 / 86044 show all
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
98.0392
97.1503
98.9446
91.0613
3751137542
50.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.9964
97.4638
98.5348
91.1104
269726942
50.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
90.9091
106410600
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3553
99.2639
99.4469
87.8858
26972026971513
86.6667
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.3771
99.4898
99.2647
88.8454
1755917551311
84.6154
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3133
98.8433
99.7877
85.5411
9401194022
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4720
99.4510
99.4930
87.3253
23551323551211
91.6667
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4723
99.6037
99.3412
88.4492
150861508109
90.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4703
99.1784
99.7639
84.6391
845784522
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5462
99.5186
99.5739
79.3195
1074952107494613
28.2609
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4119
99.4624
99.3614
80.8398
68463768464411
25.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.8571
30300
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7825
99.6169
99.9487
75.9091
390015390022
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.2960
99.5274
99.0657
69.8134
454862164548642930
6.9930
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0051
99.4671
98.5473
71.4531
285591532855942123
5.4632
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.8421
1501500
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7905
99.6289
99.9527
66.4771
16912631691287
87.5000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7729
99.7421
99.8038
67.8356
96672596671915
78.9474
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7675
99.7915
99.7435
70.0911
62231362231612
75.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7826
99.6527
99.9129
62.6693
344312344333
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_51to200*
97.5610
95.2381
100.0000
97.2918
4024000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_51to200het
96.1538
92.5926
100.0000
97.7457
2522500
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9016
1501500
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9156
99.9069
99.9243
55.5895
171611617157138
61.5385
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9052
99.8917
99.9188
56.2157
11072121106894
44.4444
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9343
99.9343
54.3868
60844608444
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.1348
99.8900
98.3909
39.6771
1816320181602974
1.3468
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.6516
99.8513
97.4804
41.9937
1141617114132952
0.6780
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.1476
67423674222
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_51to200*
95.0000
93.0070
97.0803
92.6304
1331013343
75.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_51to200het
95.5665
95.0980
96.0396
92.5019
9759743
75.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.5065
87.8049
100.0000
92.9688
3653600
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000