PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85201-85250 / 86044 show all
bgallagher-sentieonSNP**hetalt
99.7699
99.5408
100.0000
40.6164
867486700
bgallagher-sentieonSNP**homalt
99.9858
99.9781
99.9936
17.1960
117990225911798787666
86.8421
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
bgallagher-sentieonSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
bgallagher-sentieonSNP*HG002complexvarhomalt
99.9685
99.9494
99.9875
19.8511
2884281462884033634
94.4444
bgallagher-sentieonSNP*HG002compoundhet*
99.8063
99.8025
99.8102
41.0420
2577151257644925
51.0204
bgallagher-sentieonSNP*HG002compoundhethet
99.7460
99.7320
99.7601
45.7386
1414038141383411
32.3529
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
bgallagher-sentieonSNP*decoy*
0.0000
100.0000
00000
bgallagher-sentieonSNP*decoyhet
0.0000
100.0000
00000
bgallagher-sentieonSNP*decoyhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*decoyhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
bgallagher-sentieonSNP*func_cdshet
99.8344
99.9731
99.6961
26.0085
11158311155340
0.0000
bgallagher-sentieonSNP*func_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
bgallagher-sentieonSNP*func_cdshomalt
99.9785
99.9570
100.0000
20.9518
69763697600
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2848
99.0764
99.4941
66.4545
4720444720245
20.8333
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.0536
98.9058
99.2019
69.0574
2983332983245
20.8333
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6844
99.3707
100.0000
60.6925
173711173700
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6082
99.8778
99.3401
60.0690
55563685555236930
8.1301
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4306
99.8701
98.9950
61.8984
35373463536235920
5.5710
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.3529
1211200
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.2960
99.5274
99.0657
69.8134
454862164548642930
6.9930
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0051
99.4671
98.5473
71.4531
285591532855942123
5.4632
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
86.8421
1501500
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7905
99.6289
99.9527
66.4771
16912631691287
87.5000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4872
99.3714
99.6033
48.0102
4268274268170
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2546
99.1437
99.3657
50.4529
2663232663170
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8755
99.7514
100.0000
43.3263
16054160500
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7497
99.8706
99.6290
54.7353
617686176230
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6192
99.8219
99.4173
56.4253
392473924230
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.4033
22511225100
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8198
99.9742
99.6658
59.2542
387713877130
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7200
99.9599
99.4812
60.3982
249312493130
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
56.9829
13830138300