PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85851-85900 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | * | hetalt | 96.9096 | 94.0524 | 99.9458 | 58.8135 | 23736 | 1501 | 23960 | 13 | 12 | 92.3077 | |
| hfeng-pmm1 | INDEL | * | * | homalt | 99.6836 | 99.7787 | 99.5886 | 55.4406 | 124895 | 277 | 124903 | 516 | 501 | 97.0930 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | * | 99.1357 | 98.4949 | 99.7850 | 57.1428 | 75780 | 1158 | 75642 | 163 | 121 | 74.2331 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | het | 98.8731 | 97.9378 | 99.8265 | 56.4583 | 45259 | 953 | 44888 | 78 | 43 | 55.1282 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | hetalt | 97.6611 | 95.6475 | 99.7614 | 69.0744 | 3538 | 161 | 3763 | 9 | 8 | 88.8889 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | homalt | 99.7782 | 99.8372 | 99.7192 | 55.9241 | 26983 | 44 | 26991 | 76 | 70 | 92.1053 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | * | 94.8334 | 92.5834 | 97.1953 | 59.6665 | 27738 | 2222 | 27620 | 797 | 774 | 97.1142 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | het | 86.5457 | 82.4866 | 91.0249 | 77.7276 | 3377 | 717 | 3144 | 310 | 291 | 93.8710 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | hetalt | 96.9242 | 94.0469 | 99.9832 | 52.2156 | 23681 | 1499 | 23796 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | homalt | 73.5533 | 99.1254 | 58.4695 | 77.3735 | 680 | 6 | 680 | 483 | 480 | 99.3789 | |
| hfeng-pmm1 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9270 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9334 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8384 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9263 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | func_cds | * | 99.4386 | 99.3258 | 99.5516 | 42.1530 | 442 | 3 | 444 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | func_cds | het | 99.0697 | 99.0654 | 99.0741 | 46.6667 | 212 | 2 | 214 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 36.1582 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4140 | 91.7105 | 97.2817 | 66.6928 | 9238 | 835 | 9090 | 254 | 209 | 82.2835 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1710 | 92.9950 | 95.3770 | 77.2463 | 3757 | 283 | 3466 | 168 | 128 | 76.1905 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.9701 | 86.9508 | 99.8848 | 40.2923 | 3325 | 499 | 3468 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9642 | 97.6007 | 96.3360 | 64.2948 | 2156 | 53 | 2156 | 82 | 77 | 93.9024 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.6829 | 95.0000 | 90.4762 | 99.2580 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 91.6667 | 91.6667 | 91.6667 | 99.2883 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4253 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9724 | 98.3166 | 99.6370 | 70.9510 | 92859 | 1590 | 92766 | 338 | 265 | 78.4024 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8413 | 98.1645 | 99.5274 | 73.0408 | 47385 | 886 | 47174 | 224 | 154 | 68.7500 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9045 | 95.9136 | 99.9799 | 60.6514 | 14787 | 630 | 14905 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6995 | 99.7594 | 99.6396 | 71.1645 | 30687 | 74 | 30687 | 111 | 109 | 98.1982 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9439 | 96.7636 | 99.1534 | 64.2879 | 63236 | 2115 | 63011 | 538 | 416 | 77.3234 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9479 | 94.1155 | 99.9561 | 40.9419 | 15722 | 983 | 15944 | 7 | 6 | 85.7143 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5637 | 96.6141 | 98.5322 | 74.8332 | 2083 | 73 | 2081 | 31 | 8 | 25.8065 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3498 | 96.6561 | 98.0535 | 76.7797 | 1214 | 42 | 1209 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9487 | 86.8263 | 100.0000 | 68.7764 | 145 | 22 | 148 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9071 | 98.7722 | 99.0424 | 71.9709 | 724 | 9 | 724 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.3012 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.2381 | 100.0000 | 90.9091 | 99.3176 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5084 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3726 | 99.0232 | 99.7245 | 73.4687 | 5069 | 50 | 5067 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1793 | 98.7333 | 99.6293 | 74.5125 | 2962 | 38 | 2956 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6957 | 97.4249 | 100.0000 | 76.3562 | 227 | 6 | 231 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7612 | 99.6819 | 99.8407 | 71.1771 | 1880 | 6 | 1880 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6820 | 99.5032 | 99.8615 | 74.2124 | 3605 | 18 | 3605 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5544 | 99.2984 | 99.8118 | 74.6933 | 2123 | 15 | 2121 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.2366 | 98.4848 | 100.0000 | 80.0604 | 130 | 2 | 132 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9261 | 99.9261 | 99.9261 | 72.6113 | 1352 | 1 | 1352 | 1 | 0 | 0.0000 | |