PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85501-85550 / 86044 show all
gduggal-snapvardSNP*map_l250_m2_e1homalt
96.5507
93.7822
99.4876
88.0830
25491692524139
69.2308
gduggal-snapvardSNP*map_siren*
96.2272
96.4179
96.0373
65.1379
14099052381390385737591
10.3016
gduggal-snapvardSNP*map_sirenhet
95.1967
96.5469
93.8838
69.6200
878493142867435651524
9.2727
gduggal-snapvardSNP*map_sirenhetalt
0.0000
1.2346
0.0000
0.0000
180000
gduggal-snapvardSNP*map_sirenhomalt
98.0593
96.3449
99.8358
52.8740
531402016522958667
77.9070
gduggal-snapvardSNP*segdup*
98.2794
97.3955
99.1795
93.1728
273367312707622472
32.1429
gduggal-snapvardSNP*segduphet
98.1316
97.2975
98.9803
94.4886
168494681669517222
12.7907
gduggal-snapvardSNP*segduphetalt
0.0000
0.0000
0.0000
07000
gduggal-snapvardSNP*segduphomalt
98.5503
97.6171
99.5016
88.8814
10487256103815250
96.1538
gduggal-snapvardSNP*segdupwithalt*
0.0000
100.0000
00000
gduggal-snapvardSNP*segdupwithalthet
0.0000
100.0000
00000
gduggal-snapvardSNP*segdupwithalthetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNP*segdupwithalthomalt
0.0000
100.0000
00000
gduggal-snapvardSNP*tech_badpromoters*
88.3476
84.7134
92.3077
52.4917
13324132112
18.1818
gduggal-snapvardSNP*tech_badpromotershet
86.4516
87.0130
85.8974
57.3770
671067112
18.1818
gduggal-snapvardSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNP*tech_badpromotershomalt
90.4110
82.5000
100.0000
44.9153
66146500
ghariani-varprowlINDEL***
87.2025
87.3272
87.0781
72.0067
300877436633006324461240345
90.4353
ghariani-varprowlINDEL**het
89.6326
98.5731
82.1789
64.2989
19136127701914494151738150
91.8901
ghariani-varprowlINDEL**hetalt
0.0000
0.8995
0.0000
0.0000
22725010000
ghariani-varprowlINDEL**homalt
92.0100
87.3111
97.2434
45.5820
1092891588310918330952195
70.9208
ghariani-varprowlINDEL*HG002complexvar*
91.5434
91.6620
91.4251
69.4318
7052264157027365915330
80.8679
ghariani-varprowlINDEL*HG002complexvarhet
93.2466
97.4941
89.3538
59.7893
4505311584502053644472
83.3706
ghariani-varprowlINDEL*HG002complexvarhetalt
0.0000
3.1089
0.0000
0.0000
1153584000
ghariani-varprowlINDEL*HG002complexvarhomalt
94.5817
93.8099
95.3663
48.0723
253541673252531227858
69.9267
ghariani-varprowlINDEL*HG002compoundhet*
14.6445
14.5761
14.7135
73.0382
43672559343342512224561
97.7669
ghariani-varprowlINDEL*HG002compoundhethet
24.1441
85.8818
14.0465
61.8818
351657837082269022434
98.8717
ghariani-varprowlINDEL*HG002compoundhethetalt
0.0000
0.8975
0.0000
0.0000
22624954000
ghariani-varprowlINDEL*HG002compoundhethomalt
33.4304
91.1079
20.4709
62.9558
6256162624322127
87.4589
ghariani-varprowlINDEL*decoy*
90.0000
90.0000
90.0000
99.9820
91911
100.0000
ghariani-varprowlINDEL*decoyhet
92.3077
100.0000
85.7143
99.9761
60611
100.0000
ghariani-varprowlINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
ghariani-varprowlINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9196
30300
ghariani-varprowlINDEL*func_cds*
91.6388
92.3596
90.9292
61.0680
411344114130
73.1707
ghariani-varprowlINDEL*func_cdshet
90.6725
97.6636
84.6154
54.4280
20952093829
76.3158
ghariani-varprowlINDEL*func_cdshetalt
0.0000
0.0000
0.0000
05000
ghariani-varprowlINDEL*func_cdshomalt
93.7355
89.3805
98.5366
32.5658
2022420231
33.3333
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
43.5285
42.1324
45.0202
75.7921
42445829423151675021
97.1744
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.3707
87.9455
41.4787
65.8135
3553487356850344915
97.6361
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.6538
0.0000
0.0000
253799000
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
44.2731
30.1494
83.2915
76.5745
6661543663133106
79.6992
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
63.1579
60.0000
66.6667
99.7768
1281265
83.3333
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
75.8621
91.6667
64.7059
99.5499
1111165
83.3333
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8936
14100
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.4538
73.6260
75.3005
77.0932
6953924910694702278721717
95.3043
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
80.8597
97.6155
69.0135
75.3261
471201151472482121420445
96.3750
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
1.0638
0.0000
0.0000
16415253000
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
81.5331
72.3481
93.3894
66.7128
2225585062222215731272
80.8646
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800