PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85501-85550 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | homalt | 96.5507 | 93.7822 | 99.4876 | 88.0830 | 2549 | 169 | 2524 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | map_siren | * | 96.2272 | 96.4179 | 96.0373 | 65.1379 | 140990 | 5238 | 139038 | 5737 | 591 | 10.3016 | |
| gduggal-snapvard | SNP | * | map_siren | het | 95.1967 | 96.5469 | 93.8838 | 69.6200 | 87849 | 3142 | 86743 | 5651 | 524 | 9.2727 | |
| gduggal-snapvard | SNP | * | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | map_siren | homalt | 98.0593 | 96.3449 | 99.8358 | 52.8740 | 53140 | 2016 | 52295 | 86 | 67 | 77.9070 | |
| gduggal-snapvard | SNP | * | segdup | * | 98.2794 | 97.3955 | 99.1795 | 93.1728 | 27336 | 731 | 27076 | 224 | 72 | 32.1429 | |
| gduggal-snapvard | SNP | * | segdup | het | 98.1316 | 97.2975 | 98.9803 | 94.4886 | 16849 | 468 | 16695 | 172 | 22 | 12.7907 | |
| gduggal-snapvard | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | segdup | homalt | 98.5503 | 97.6171 | 99.5016 | 88.8814 | 10487 | 256 | 10381 | 52 | 50 | 96.1538 | |
| gduggal-snapvard | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | tech_badpromoters | * | 88.3476 | 84.7134 | 92.3077 | 52.4917 | 133 | 24 | 132 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | het | 86.4516 | 87.0130 | 85.8974 | 57.3770 | 67 | 10 | 67 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | tech_badpromoters | homalt | 90.4110 | 82.5000 | 100.0000 | 44.9153 | 66 | 14 | 65 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | * | * | 87.2025 | 87.3272 | 87.0781 | 72.0067 | 300877 | 43663 | 300632 | 44612 | 40345 | 90.4353 | |
| ghariani-varprowl | INDEL | * | * | het | 89.6326 | 98.5731 | 82.1789 | 64.2989 | 191361 | 2770 | 191449 | 41517 | 38150 | 91.8901 | |
| ghariani-varprowl | INDEL | * | * | hetalt | 0.0000 | 0.8995 | 0.0000 | 0.0000 | 227 | 25010 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | * | homalt | 92.0100 | 87.3111 | 97.2434 | 45.5820 | 109289 | 15883 | 109183 | 3095 | 2195 | 70.9208 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | * | 91.5434 | 91.6620 | 91.4251 | 69.4318 | 70522 | 6415 | 70273 | 6591 | 5330 | 80.8679 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | het | 93.2466 | 97.4941 | 89.3538 | 59.7893 | 45053 | 1158 | 45020 | 5364 | 4472 | 83.3706 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | hetalt | 0.0000 | 3.1089 | 0.0000 | 0.0000 | 115 | 3584 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | HG002complexvar | homalt | 94.5817 | 93.8099 | 95.3663 | 48.0723 | 25354 | 1673 | 25253 | 1227 | 858 | 69.9267 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | * | 14.6445 | 14.5761 | 14.7135 | 73.0382 | 4367 | 25593 | 4334 | 25122 | 24561 | 97.7669 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | het | 24.1441 | 85.8818 | 14.0465 | 61.8818 | 3516 | 578 | 3708 | 22690 | 22434 | 98.8717 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 0.8975 | 0.0000 | 0.0000 | 226 | 24954 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | HG002compoundhet | homalt | 33.4304 | 91.1079 | 20.4709 | 62.9558 | 625 | 61 | 626 | 2432 | 2127 | 87.4589 | |
| ghariani-varprowl | INDEL | * | decoy | * | 90.0000 | 90.0000 | 90.0000 | 99.9820 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9761 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9196 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | func_cds | * | 91.6388 | 92.3596 | 90.9292 | 61.0680 | 411 | 34 | 411 | 41 | 30 | 73.1707 | |
| ghariani-varprowl | INDEL | * | func_cds | het | 90.6725 | 97.6636 | 84.6154 | 54.4280 | 209 | 5 | 209 | 38 | 29 | 76.3158 | |
| ghariani-varprowl | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | func_cds | homalt | 93.7355 | 89.3805 | 98.5366 | 32.5658 | 202 | 24 | 202 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 43.5285 | 42.1324 | 45.0202 | 75.7921 | 4244 | 5829 | 4231 | 5167 | 5021 | 97.1744 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 56.3707 | 87.9455 | 41.4787 | 65.8135 | 3553 | 487 | 3568 | 5034 | 4915 | 97.6361 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.6538 | 0.0000 | 0.0000 | 25 | 3799 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 44.2731 | 30.1494 | 83.2915 | 76.5745 | 666 | 1543 | 663 | 133 | 106 | 79.6992 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.7768 | 12 | 8 | 12 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.8621 | 91.6667 | 64.7059 | 99.5499 | 11 | 1 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 33.3333 | 20.0000 | 100.0000 | 99.8936 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.4538 | 73.6260 | 75.3005 | 77.0932 | 69539 | 24910 | 69470 | 22787 | 21717 | 95.3043 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 80.8597 | 97.6155 | 69.0135 | 75.3261 | 47120 | 1151 | 47248 | 21214 | 20445 | 96.3750 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.0638 | 0.0000 | 0.0000 | 164 | 15253 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 81.5331 | 72.3481 | 93.3894 | 66.7128 | 22255 | 8506 | 22222 | 1573 | 1272 | 80.8646 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.6441 | 58.6663 | 60.6552 | 76.8269 | 38339 | 27012 | 38291 | 24838 | 23765 | 95.6800 | |