PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85451-85500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | het | 93.3754 | 96.7973 | 90.1872 | 78.6618 | 45396 | 1502 | 44805 | 4875 | 376 | 7.7128 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | homalt | 98.0418 | 96.3556 | 99.7880 | 62.8493 | 26783 | 1013 | 26357 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | * | 90.5380 | 95.5326 | 86.0396 | 81.8589 | 18519 | 866 | 18286 | 2967 | 202 | 6.8082 | |
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | het | 87.4804 | 96.0281 | 80.3301 | 84.3236 | 12161 | 503 | 12023 | 2944 | 184 | 6.2500 | |
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | homalt | 97.1180 | 94.7259 | 99.6341 | 71.0042 | 6358 | 354 | 6263 | 23 | 18 | 78.2609 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | * | 93.5846 | 96.5275 | 90.8158 | 77.9328 | 43753 | 1574 | 43182 | 4367 | 333 | 7.6254 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | het | 91.2586 | 96.8794 | 86.2542 | 81.2481 | 27506 | 886 | 27183 | 4332 | 306 | 7.0637 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | homalt | 97.9102 | 96.1077 | 99.7817 | 66.1808 | 16247 | 658 | 15999 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | * | 93.7014 | 96.5392 | 91.0256 | 79.3194 | 45106 | 1617 | 44517 | 4389 | 336 | 7.6555 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | het | 91.4436 | 96.8927 | 86.5748 | 82.3864 | 28407 | 911 | 28071 | 4353 | 308 | 7.0756 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | homalt | 97.9110 | 96.1094 | 99.7816 | 68.5446 | 16699 | 676 | 16446 | 36 | 28 | 77.7778 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | * | 93.7321 | 96.5489 | 91.0750 | 79.3697 | 45573 | 1629 | 44971 | 4407 | 338 | 7.6696 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | het | 91.4989 | 96.9163 | 86.6551 | 82.4293 | 28726 | 914 | 28383 | 4371 | 310 | 7.0922 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | homalt | 97.9034 | 96.0929 | 99.7834 | 68.5949 | 16847 | 685 | 16588 | 36 | 28 | 77.7778 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | * | 88.5661 | 95.0964 | 82.8750 | 85.4707 | 11442 | 590 | 11300 | 2335 | 147 | 6.2955 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | het | 85.0213 | 95.7305 | 76.4670 | 87.2666 | 7601 | 339 | 7519 | 2314 | 131 | 5.6612 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | homalt | 96.6127 | 93.9349 | 99.4477 | 77.1281 | 3841 | 248 | 3781 | 21 | 16 | 76.1905 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | * | 92.1558 | 96.2756 | 88.3741 | 81.2786 | 29469 | 1140 | 29091 | 3827 | 280 | 7.3164 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | het | 89.3113 | 96.7385 | 82.9433 | 83.9813 | 18686 | 630 | 18464 | 3797 | 256 | 6.7422 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | homalt | 97.6436 | 95.6533 | 99.7185 | 71.0895 | 10783 | 490 | 10627 | 30 | 24 | 80.0000 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | * | 92.3600 | 96.3299 | 88.7044 | 82.4713 | 30683 | 1169 | 30289 | 3857 | 284 | 7.3632 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | het | 89.6113 | 96.7913 | 83.4229 | 84.9670 | 19487 | 646 | 19254 | 3826 | 259 | 6.7695 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | homalt | 97.6688 | 95.7005 | 99.7199 | 73.1870 | 11196 | 503 | 11035 | 31 | 25 | 80.6452 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | * | 92.4051 | 96.3396 | 88.7794 | 82.5294 | 31031 | 1179 | 30628 | 3871 | 287 | 7.4141 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | het | 89.6801 | 96.8079 | 83.5299 | 85.0251 | 19713 | 650 | 19475 | 3840 | 262 | 6.8229 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | homalt | 97.6681 | 95.6963 | 99.7228 | 73.2280 | 11318 | 509 | 11153 | 31 | 25 | 80.6452 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | * | 79.3745 | 93.3489 | 69.0393 | 94.3087 | 1993 | 142 | 1969 | 883 | 24 | 2.7180 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | het | 74.0125 | 93.3599 | 61.3074 | 94.5783 | 1406 | 100 | 1388 | 876 | 18 | 2.0548 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | homalt | 95.9878 | 93.3227 | 98.8095 | 92.9615 | 587 | 42 | 581 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | * | 85.6069 | 95.3199 | 77.6904 | 91.0746 | 6884 | 338 | 6815 | 1957 | 96 | 4.9055 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | het | 81.0291 | 96.2566 | 69.9614 | 91.9347 | 4577 | 178 | 4530 | 1945 | 87 | 4.4730 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | homalt | 96.4845 | 93.6663 | 99.4776 | 87.2382 | 2307 | 156 | 2285 | 12 | 9 | 75.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | * | 86.3034 | 95.4344 | 78.7671 | 91.5243 | 7525 | 360 | 7449 | 2008 | 101 | 5.0299 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | het | 81.9515 | 96.3612 | 71.2908 | 92.3358 | 5005 | 189 | 4954 | 1995 | 92 | 4.6115 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | homalt | 96.5678 | 93.8198 | 99.4817 | 88.0057 | 2520 | 166 | 2495 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | * | 86.3822 | 95.4176 | 78.9099 | 91.6016 | 7621 | 366 | 7543 | 2016 | 102 | 5.0595 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | het | 82.0702 | 96.3526 | 71.4754 | 92.4111 | 5072 | 192 | 5019 | 2003 | 93 | 4.6430 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||