PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84251-84300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | het | 97.8792 | 99.5826 | 96.2332 | 80.4169 | 20278 | 85 | 19646 | 769 | 22 | 2.8609 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | hetalt | 99.6139 | 100.0000 | 99.2308 | 75.0480 | 20 | 0 | 129 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | homalt | 99.8415 | 99.7971 | 99.8860 | 75.5645 | 11803 | 24 | 11393 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | * | 98.0582 | 99.2506 | 96.8941 | 94.2786 | 2119 | 16 | 2059 | 66 | 4 | 6.0606 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | het | 97.4164 | 99.0704 | 95.8167 | 94.5377 | 1492 | 14 | 1443 | 63 | 2 | 3.1746 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 93.5185 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | homalt | 99.6776 | 99.6820 | 99.6732 | 93.5320 | 627 | 2 | 610 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | * | 98.8785 | 99.4323 | 98.3308 | 90.1611 | 7181 | 41 | 7010 | 119 | 12 | 10.0840 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | het | 98.4331 | 99.3060 | 97.5755 | 90.8816 | 4722 | 33 | 4588 | 114 | 8 | 7.0175 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | hetalt | 98.1132 | 100.0000 | 96.2963 | 87.5000 | 4 | 0 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | homalt | 99.7542 | 99.6752 | 99.8333 | 88.3918 | 2455 | 8 | 2396 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | * | 98.9405 | 99.4800 | 98.4068 | 90.5464 | 7844 | 41 | 7659 | 124 | 12 | 9.6774 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | het | 98.5164 | 99.3647 | 97.6826 | 91.1394 | 5161 | 33 | 5016 | 119 | 8 | 6.7227 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | homalt | 99.7746 | 99.7022 | 99.8472 | 89.1514 | 2678 | 8 | 2613 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | * | 98.9222 | 99.4867 | 98.3642 | 90.6150 | 7946 | 41 | 7757 | 129 | 12 | 9.3023 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | het | 98.4883 | 99.3731 | 97.6190 | 91.2048 | 5231 | 33 | 5084 | 124 | 8 | 6.4516 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | * | * | 76.4210 | 69.0418 | 85.5664 | 67.7420 | 237878 | 106664 | 258555 | 43614 | 6600 | 15.1328 | |
| gduggal-snapplat | INDEL | * | * | het | 75.6756 | 70.3729 | 81.8427 | 68.5533 | 136617 | 57516 | 150007 | 33280 | 2606 | 7.8305 | |
| gduggal-snapplat | INDEL | * | * | hetalt | 51.2002 | 36.0859 | 88.1005 | 81.7746 | 9107 | 16130 | 9151 | 1236 | 915 | 74.0291 | |
| gduggal-snapplat | INDEL | * | * | homalt | 81.6385 | 73.6219 | 91.6144 | 63.4553 | 92154 | 33018 | 99397 | 9098 | 3079 | 33.8426 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | * | 75.2674 | 67.2243 | 85.4968 | 64.1998 | 51721 | 25217 | 55926 | 9487 | 1463 | 15.4211 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | het | 73.0648 | 65.5393 | 82.5428 | 64.5149 | 30287 | 15925 | 32942 | 6967 | 459 | 6.5882 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | hetalt | 48.8074 | 34.6851 | 82.3281 | 84.4012 | 1283 | 2416 | 1365 | 293 | 225 | 76.7918 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | homalt | 81.8252 | 74.5588 | 90.6609 | 60.0040 | 20151 | 6876 | 21619 | 2227 | 779 | 34.9798 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | * | 42.2745 | 36.5854 | 50.0587 | 72.5688 | 10961 | 18999 | 11522 | 11495 | 5404 | 47.0117 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | het | 24.1644 | 34.9047 | 18.4785 | 71.1703 | 1429 | 2665 | 1727 | 7619 | 2083 | 27.3395 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | hetalt | 52.0071 | 36.1279 | 92.7918 | 75.2011 | 9097 | 16083 | 9127 | 709 | 591 | 83.3568 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | homalt | 27.3298 | 63.4111 | 17.4185 | 67.5742 | 435 | 251 | 668 | 3167 | 2730 | 86.2015 | |
| gduggal-snapplat | INDEL | * | decoy | * | 46.1538 | 30.0000 | 100.0000 | 99.9940 | 3 | 7 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | het | 50.0000 | 33.3333 | 100.0000 | 99.9964 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9779 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | func_cds | * | 70.8193 | 61.5730 | 83.3333 | 53.5627 | 274 | 171 | 315 | 63 | 1 | 1.5873 | |
| gduggal-snapplat | INDEL | * | func_cds | het | 59.9589 | 51.8692 | 71.0383 | 65.2751 | 111 | 103 | 130 | 53 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | func_cds | hetalt | 33.3333 | 20.0000 | 100.0000 | 75.0000 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | func_cds | homalt | 81.6523 | 71.6814 | 94.8454 | 31.4488 | 162 | 64 | 184 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.4305 | 22.6149 | 42.1263 | 81.2487 | 2278 | 7795 | 2734 | 3756 | 1082 | 28.8072 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 27.4935 | 24.7277 | 30.9558 | 84.2395 | 999 | 3041 | 1276 | 2846 | 368 | 12.9304 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 25.0124 | 14.6182 | 86.5625 | 67.4300 | 559 | 3265 | 554 | 86 | 66 | 76.7442 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 40.1642 | 32.5939 | 52.3148 | 73.3785 | 720 | 1489 | 904 | 824 | 648 | 78.6408 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 44.1176 | 30.0000 | 83.3333 | 99.9060 | 6 | 14 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 61.5385 | 50.0000 | 80.0000 | 99.8972 | 6 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9274 | 0 | 5 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 67.1528 | 57.9879 | 79.7584 | 80.2389 | 54769 | 39680 | 61674 | 15652 | 4576 | 29.2359 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 65.4034 | 58.8863 | 73.5426 | 80.9801 | 28425 | 19846 | 32333 | 11632 | 1955 | 16.8071 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 54.4770 | 39.2554 | 88.9798 | 82.4941 | 6052 | 9365 | 6088 | 754 | 644 | 85.4111 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 75.2906 | 65.9666 | 87.6843 | 78.0956 | 20292 | 10469 | 23253 | 3266 | 1977 | 60.5328 | |