PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84101-84150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9917 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | func_cds | * | 98.2084 | 99.9669 | 96.5106 | 26.4105 | 18144 | 6 | 17950 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | func_cds | het | 97.1259 | 99.9642 | 94.4444 | 28.6508 | 11157 | 4 | 11033 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.9545 | 10 | 0 | 37 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 21.9335 | 6977 | 2 | 6880 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.2516 | 98.6776 | 88.3913 | 75.0612 | 4701 | 63 | 4500 | 591 | 44 | 7.4450 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.4663 | 98.5411 | 85.3394 | 78.6638 | 2972 | 44 | 2829 | 486 | 15 | 3.0864 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 84.2105 | 94.1538 | 0 | 0 | 16 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4962 | 98.9130 | 94.1946 | 61.4016 | 1729 | 19 | 1655 | 102 | 27 | 26.4706 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9963 | 99.5003 | 96.5372 | 58.7333 | 55353 | 278 | 52773 | 1893 | 213 | 11.2520 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.3253 | 99.6076 | 95.1454 | 61.7302 | 35280 | 139 | 33318 | 1700 | 145 | 8.5294 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.6508 | 100.0000 | 99.3039 | 77.5052 | 13 | 0 | 428 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1613 | 99.3118 | 99.0113 | 50.7900 | 20060 | 139 | 19027 | 190 | 66 | 34.7368 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.0417 | 99.3129 | 89.3019 | 78.9695 | 45388 | 314 | 43340 | 5192 | 210 | 4.0447 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 98.7179 | 100.0000 | 97.4684 | 89.0733 | 15 | 0 | 231 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8358 | 99.1988 | 98.4754 | 71.0733 | 16839 | 136 | 16083 | 249 | 72 | 28.9157 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.0198 | 99.8511 | 88.8320 | 71.0242 | 2682 | 4 | 2601 | 327 | 6 | 1.8349 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.8257 | 0 | 0 | 10 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4629 | 99.5028 | 99.4231 | 53.9823 | 1601 | 8 | 1551 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8074 | 99.7089 | 94.0700 | 62.9542 | 6166 | 18 | 5917 | 373 | 14 | 3.7534 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.3296 | 99.8474 | 91.2029 | 66.5610 | 3925 | 6 | 3753 | 362 | 12 | 3.3149 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.2319 | 1 | 0 | 19 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4785 | 99.4671 | 99.4898 | 52.4587 | 2240 | 12 | 2145 | 11 | 2 | 18.1818 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.2808 | 99.7163 | 94.9614 | 65.1121 | 3867 | 11 | 3694 | 196 | 8 | 4.0816 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.0835 | 99.8396 | 92.5998 | 68.1347 | 2490 | 4 | 2365 | 189 | 7 | 3.7037 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.5556 | 1 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4824 | 99.4939 | 99.4709 | 56.5517 | 1376 | 7 | 1316 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0497 | 90.1554 | 60.0000 | 90.1623 | 348 | 38 | 291 | 194 | 26 | 13.4021 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.7070 | 89.4928 | 59.8187 | 91.4779 | 247 | 29 | 198 | 133 | 8 | 6.0150 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 93.5484 | 0 | 0 | 5 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.7749 | 91.8182 | 60.2740 | 84.1649 | 101 | 9 | 88 | 58 | 16 | 27.5862 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.4828 | 94.9577 | 76.0894 | 85.5630 | 2580 | 137 | 2043 | 642 | 92 | 14.3302 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.2006 | 94.8980 | 70.9586 | 87.8472 | 1674 | 90 | 1251 | 512 | 45 | 8.7891 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0149 | 100.0000 | 94.2029 | 85.9470 | 2 | 0 | 65 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.8753 | 95.0578 | 85.2286 | 76.3056 | 904 | 47 | 727 | 126 | 44 | 34.9206 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 86.6953 | 95.6926 | 79.2444 | 84.6511 | 2266 | 102 | 1783 | 467 | 71 | 15.2034 | |