PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83451-83500 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | homalt | 98.7971 | 97.9332 | 99.6764 | 93.3875 | 616 | 13 | 616 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | * | 97.6861 | 97.3276 | 98.0471 | 89.3479 | 7029 | 193 | 7029 | 140 | 38 | 27.1429 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | het | 97.0310 | 96.9085 | 97.1537 | 89.8249 | 4608 | 147 | 4608 | 135 | 33 | 24.4444 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | homalt | 98.9560 | 98.1324 | 99.7936 | 88.2570 | 2417 | 46 | 2417 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | * | 97.8174 | 97.4762 | 98.1609 | 89.8565 | 7686 | 199 | 7686 | 144 | 38 | 26.3889 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | het | 97.2051 | 97.0928 | 97.3176 | 90.2537 | 5043 | 151 | 5043 | 139 | 33 | 23.7410 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | homalt | 99.0054 | 98.2130 | 99.8108 | 88.9664 | 2638 | 48 | 2638 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | * | 97.8266 | 97.4959 | 98.1596 | 89.9363 | 7787 | 200 | 7787 | 146 | 39 | 26.7123 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | het | 97.2238 | 97.1315 | 97.3163 | 90.3357 | 5113 | 151 | 5113 | 141 | 34 | 24.1135 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | homalt | 98.9985 | 98.1972 | 99.8130 | 89.0383 | 2669 | 49 | 2669 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_siren | * | 99.2387 | 99.3893 | 99.0885 | 58.6242 | 145335 | 893 | 145339 | 1337 | 225 | 16.8287 | |
| gduggal-bwafb | SNP | * | map_siren | het | 98.9549 | 99.3230 | 98.5895 | 60.8677 | 90375 | 616 | 90379 | 1293 | 200 | 15.4679 | |
| gduggal-bwafb | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_siren | homalt | 99.7102 | 99.5014 | 99.9199 | 54.2074 | 54881 | 275 | 54881 | 44 | 25 | 56.8182 | |
| gduggal-bwafb | SNP | * | segdup | * | 98.9280 | 99.4656 | 98.3963 | 91.8876 | 27917 | 150 | 27917 | 455 | 30 | 6.5934 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| gduggal-bwafb | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1579 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | segdup | homalt | 99.7625 | 99.6928 | 99.8322 | 89.4414 | 10710 | 33 | 10710 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | tech_badpromoters | * | 98.4326 | 100.0000 | 96.9136 | 57.8125 | 157 | 0 | 157 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | het | 96.8553 | 100.0000 | 93.9024 | 62.0370 | 77 | 0 | 77 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 80 | 0 | 80 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | * | 75.3654 | 60.6881 | 99.4067 | 87.7186 | 28646 | 18556 | 28653 | 171 | 47 | 27.4854 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | het | 80.1160 | 67.2065 | 99.1643 | 89.4169 | 19920 | 9720 | 19934 | 168 | 44 | 26.1905 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | homalt | 66.3796 | 49.6863 | 99.9655 | 80.4451 | 8711 | 8821 | 8704 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | * | 57.1530 | 40.1263 | 99.2803 | 94.5754 | 4828 | 7204 | 4828 | 35 | 15 | 42.8571 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | het | 60.8863 | 43.9547 | 99.0352 | 95.3638 | 3490 | 4450 | 3490 | 34 | 14 | 41.1765 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | homalt | 49.2722 | 32.6975 | 99.9253 | 90.1218 | 1337 | 2752 | 1337 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | * | 68.1780 | 51.8769 | 99.4179 | 90.5327 | 15879 | 14730 | 15883 | 93 | 29 | 31.1828 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | het | 73.2588 | 58.0710 | 99.2046 | 91.8292 | 11217 | 8099 | 11225 | 90 | 26 | 28.8889 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 94.3396 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | homalt | 58.4217 | 41.2756 | 99.9355 | 84.5500 | 4653 | 6620 | 4649 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | * | 69.3373 | 53.2274 | 99.4313 | 91.0275 | 16954 | 14898 | 16958 | 97 | 30 | 30.9278 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | het | 74.3081 | 59.3950 | 99.2206 | 92.2348 | 11958 | 8175 | 11966 | 94 | 27 | 28.7234 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1613 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | homalt | 59.7639 | 42.6276 | 99.9398 | 85.5833 | 4987 | 6712 | 4983 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | * | 69.5020 | 53.4244 | 99.4224 | 91.0196 | 17208 | 15002 | 17212 | 100 | 30 | 30.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | het | 74.4402 | 59.5688 | 99.2072 | 92.2354 | 12130 | 8233 | 12138 | 97 | 27 | 27.8351 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1872 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | homalt | 59.9917 | 42.8596 | 99.9408 | 85.5254 | 5069 | 6758 | 5065 | 3 | 3 | 100.0000 | |