PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
651-700 / 86044 show all
ndellapenna-hhgaSNPtvmap_l100_m2_e1het
99.0340
98.4126
99.6632
64.7264
15685253156855317
32.0755
ndellapenna-hhgaSNPtvmap_l100_m2_e1*
99.2907
98.8332
99.7525
64.4232
24988295249886224
38.7097
ndellapenna-hhgaSNPtvmap_l100_m2_e0homalt
99.7609
99.6093
99.9129
63.7805
917836917886
75.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e0hetalt
91.1392
85.7143
97.2973
79.7814
3663611
100.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e0het
99.0369
98.4154
99.6662
64.6823
15527250155275217
32.6923
ndellapenna-hhgaSNPtvmap_l100_m2_e0*
99.2917
98.8335
99.7541
64.3936
24741292247416124
39.3443
ndellapenna-hhgaSNPtvmap_l100_m1_e0homalt
99.7619
99.6130
99.9113
61.1747
900835900886
75.0000
ndellapenna-hhgaSNPtvmap_l100_m1_e0hetalt
90.9091
85.3659
97.2222
77.7778
3563511
100.0000
ndellapenna-hhgaSNPtvmap_l100_m1_e0het
99.0304
98.3784
99.6911
62.9947
15167250151674717
36.1702
ndellapenna-hhgaSNPtvmap_l100_m1_e0*
99.2885
98.8123
99.7692
62.3765
24210291242105624
42.8571
ndellapenna-hhgaSNPtvmap_l100_m0_e0homalt
99.6482
99.4280
99.8694
61.5639
382422382453
60.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0hetalt
90.3226
87.5000
93.3333
79.1667
1421411
100.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0het
98.6590
97.7984
99.5349
67.9349
706315970633313
39.3939
ndellapenna-hhgaSNPtvmap_l100_m0_e0*
98.9920
98.3490
99.6435
65.9868
10901183109013917
43.5897
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.5000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.0392
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7712
99.7712
99.7712
36.2974
13083130833
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3658
98.9242
99.8113
35.2869
211523211641
25.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5204
99.2464
99.7960
35.7063
342426342574
57.1429
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
90.9091
83.3333
100.0000
95.0617
51400
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
86.1538
77.7778
96.5517
86.0577
2882810
0.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
86.8064
78.5714
96.9697
88.5813
3393210
0.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.4376
99.3474
99.5280
38.8679
27401827411313
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
62.5000
50511
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.2827
98.8697
99.6991
37.4429
4636534639144
28.5714
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.3339
99.0472
99.6223
38.0132
73817173852818
64.2857
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7425
99.6656
99.8196
59.9732
387413387476
85.7143
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.7217
99.5441
99.8999
60.0411
698732698774
57.1429
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7292
99.5876
99.8713
60.0265
1086645108661410
71.4286
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
82.3529
77.7778
87.5000
88.8889
72711
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200het
78.5714
64.7059
100.0000
96.3333
1161100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200*
80.0000
69.2308
94.7368
94.8925
1881811
100.0000