PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
851-900 / 86044 show all
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.8883
93.1278
98.8175
40.7349
15557114816463197178
90.3553
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.3939
98.8110
96.0169
66.9230
1795021618586771551
71.4656
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
97.2439
97.3027
97.1852
57.6417
35605987382561108730
65.8845
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.4857
98.0964
96.8826
61.5590
1546030016751539278
51.5770
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2978
94.0048
98.7055
32.8581
984762810599139132
94.9640
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.7920
99.4303
96.2068
45.3054
102985910906430320
74.4186
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
82.8529
82.0562
83.6653
62.9041
17243771680328287
87.5000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
77.8716
90.2041
68.5057
80.6495
44248298137123
89.7810
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.6939
74.8403
97.5355
31.8035
93731510292623
88.4615
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
79.7448
96.1003
68.1467
47.3577
34514353165141
85.4545
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4435
99.1224
99.7666
66.9356
28012248282076617
25.7576
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3035
98.8131
99.7988
59.4317
1623419516370333
9.0909
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.8256
96.4486
99.2424
73.9001
5161952444
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7217
99.6990
99.7443
56.4874
1126234113132910
34.4828
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
92.4647
88.7097
96.5517
99.9368
1101411240
0.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
89.7542
85.0575
95.0000
99.9024
74137640
0.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
96.7742
93.7500
100.0000
99.8973
1511500
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9636
2102100
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.6420
98.4090
98.8761
66.2789
195463162023523048
20.8696
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.5442
98.3435
98.7456
63.1402
109241841133614415
10.4167
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.2955
97.2036
99.4122
43.2207
26077527061610
62.5000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.9717
99.0613
98.8823
57.7880
60155761937023
32.8571
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
95.3387
95.0659
95.6131
74.9211
2524131265912256
45.9016
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
94.5134
94.8347
94.1942
82.6140
918509415819
32.7586
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.2904
94.1423
98.5390
34.0824
11257012141814
77.7778
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
94.6012
97.7642
91.6364
62.8378
481115044623
50.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.0488
98.8712
99.2269
57.4163
66577669315410
18.5185
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
98.7828
98.3598
99.2095
53.1018
3598603765304
13.3333
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5679
99.2416
99.8964
30.1737
916796411
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.2731
99.5818
98.9663
47.1998
214392202235
21.7391
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200*
94.1091
95.0450
93.1915
72.5788
21111219164
25.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200het
87.6190
92.0000
83.6364
85.0949
4644692
22.2222
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.1193
94.4000
100.0000
28.7356
118712400
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
93.3333
100.0000
87.5000
56.9231
4704972
28.5714
asubramanian-gatkINDEL*map_l100_m0_e0*
91.6436
88.3557
95.1857
96.6934
13811821384708
11.4286
asubramanian-gatkINDEL*map_l100_m0_e0het
89.7495
86.5818
93.1579
91.0990
884137885656
9.2308
asubramanian-gatkINDEL*map_l100_m0_e0hetalt
95.2381
90.9091
100.0000
91.8159
3033200
asubramanian-gatkINDEL*map_l100_m0_e0homalt
95.2090
91.7485
98.9407
86.3268
4674246752
40.0000
asubramanian-gatkINDEL*map_l100_m1_e0*
92.0378
87.7579
96.7564
95.8853
3147439316210617
16.0377
asubramanian-gatkINDEL*map_l100_m1_e0het
89.5146
84.5190
95.1378
89.5888
188934618989713
13.4021
asubramanian-gatkINDEL*map_l100_m1_e0hetalt
94.5744
91.1290
98.2906
87.2964
1131111521
50.0000
asubramanian-gatkINDEL*map_l100_m1_e0homalt
96.2599
93.3170
99.3945
84.7554
114582114973
42.8571
asubramanian-gatkINDEL*map_l100_m2_e0*
92.1174
87.8960
96.7646
96.1178
3246447326010917
15.5963
asubramanian-gatkINDEL*map_l100_m2_e0het
89.6413
84.6987
95.1965
90.0770
195435319629913
13.1313
asubramanian-gatkINDEL*map_l100_m2_e0hetalt
94.6259
91.2000
98.3193
88.0762
1141111721
50.0000
asubramanian-gatkINDEL*map_l100_m2_e0homalt
96.2820
93.4179
99.3272
85.6349
117883118183
37.5000