PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
501-550 / 86044 show all
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9011
10100
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3939
20200
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.4100
20200
qzeng-customINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
21.2766
7407400
qzeng-customINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9795
20200
qzeng-customINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9825
40200
qzeng-customINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
100.0000
100.0000
100.0000
98.9011
10100
qzeng-customINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.2248
10100
qzeng-customINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
66.6667
40200
qzeng-customINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9969
10100
qzeng-customINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9977
10100
ndellapenna-hhgaSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.7564
70700
ndellapenna-hhgaSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.1818
30300
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.5000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.0392
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
91.5730
1501500
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.2381
30300
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8182
20200
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
91.5730
1501500
ndellapenna-hhgaSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.5517
17040170400
ndellapenna-hhgaSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
60.0000
1001000
ndellapenna-hhgaSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
46.0526
4104100
ndellapenna-hhgaSNPtitech_badpromotershet
100.0000
100.0000
100.0000
45.6790
4404400
ndellapenna-hhgaSNPtitech_badpromoters*
100.0000
100.0000
100.0000
45.8599
8508500
ndellapenna-hhgaSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0698
20200
ndellapenna-hhgaSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
91.6667
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
90.0000
1201200
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.7368
20200
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
90.0000
1201200
ndellapenna-hhgaSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.8947
80800
ndellapenna-hhgaSNP*segduphetalt
100.0000
100.0000
100.0000
97.7564
70700
ndellapenna-hhgaSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.1818
30300
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
91.5730
1501500
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.2381
30300