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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 36 37 38 39 40 41 42 43 44 ... 1720 1721 » 1951-2000 / 86044 show all
ndellapenna-hhga	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	98.5635	98.2824	98.8462	65.4025	515	9	514	6	5	83.3333
ndellapenna-hhga	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	26.5517	1704	0	1704	0	0
ndellapenna-hhga	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	tv	HG002compoundhet	homalt	98.4034	99.1440	97.6737	43.8897	3359	29	3359	80	78	97.5000
ndellapenna-hhga	SNP	tv	HG002complexvar	homalt	99.8464	99.8065	99.8864	22.8760	94927	184	94935	108	97	89.8148
ndellapenna-hhga	SNP	tv	*	homalt	99.9152	99.8722	99.9583	20.9089	376641	482	376648	157	123	78.3439
ndellapenna-hhga	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	46.0526	41	0	41	0	0
ndellapenna-hhga	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	ti	segdup	homalt	99.7406	99.8934	99.5882	88.2312	7497	8	7497	31	31	100.0000
ndellapenna-hhga	SNP	ti	map_siren	homalt	99.8244	99.7072	99.9418	51.3860	37805	111	37806	22	20	90.9091
ndellapenna-hhga	SNP	ti	map_l250_m2_e1	homalt	99.3193	98.8149	99.8290	86.9124	1751	21	1751	3	3	100.0000
ndellapenna-hhga	SNP	ti	map_l250_m2_e0	homalt	99.3103	98.7993	99.8267	86.8804	1728	21	1728	3	3	100.0000
ndellapenna-hhga	SNP	ti	map_l250_m1_e0	homalt	99.2491	98.6932	99.8112	85.5873	1586	21	1586	3	3	100.0000
ndellapenna-hhga	SNP	ti	map_l250_m0_e0	homalt	98.9619	98.3945	99.5360	89.9276	429	7	429	2	2	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	homalt	99.6938	99.4670	99.9217	72.2586	7652	41	7652	6	6	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e0	homalt	99.6907	99.4617	99.9209	72.2145	7575	41	7575	6	6	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	homalt	99.6785	99.4404	99.9177	69.6369	7286	41	7286	6	6	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m0_e0	homalt	99.5641	99.2756	99.8543	71.8779	2741	20	2741	4	4	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	homalt	99.7508	99.5636	99.9387	67.6903	11408	50	11408	7	7	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	homalt	99.7486	99.5598	99.9381	67.6520	11308	50	11308	7	7	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	homalt	99.7415	99.5473	99.9364	64.8588	10995	50	10995	7	7	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m0_e0	homalt	99.6092	99.3097	99.9104	66.0377	4460	31	4460	4	4	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	homalt	99.7970	99.6756	99.9187	61.7788	18434	60	18434	15	15	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6723	99.9179	61.7916	18249	60	18249	15	15	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6659	99.9274	59.1233	17900	60	17900	13	13	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	homalt	99.6905	99.4469	99.9354	59.4017	7731	43	7731	5	5	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	66.6667	50.0000	100.0000	95.6522	1	1	1	0	0
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8949	99.8598	99.9299	27.9657	1425	2	1426	1	0	0.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	85.2459	74.2857	100.0000	90.4762	26	9	26	0	0
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4850	99.2977	99.6730	35.9284	3959	28	3962	13	12	92.3077
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7955	99.7728	99.8183	42.2613	2196	5	2197	4	3	75.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	90.9091	83.3333	100.0000	95.2830	5	1	5	0	0
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5750	98.2820	98.8697	60.9705	1659	29	1662	19	15	78.9474
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.9059	99.0898	98.7227	77.8437	2395	22	2396	31	26	83.8710
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.4955	96.8668	94.1624	79.5749	371	12	371	23	18	78.2609
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	95.1002	96.1712	94.0529	81.2552	427	17	427	27	22	81.4815
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.8054	92.7536	92.8571	88.0342	64	5	65	5	5	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6503	99.6503	99.6503	49.2608	855	3	855	3	3	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7270	99.6589	99.7951	46.6278	1461	5	1461	3	3	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9113	99.8227	100.0000	54.1531	1126	2	1126	0	0
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4059	99.3368	99.4750	48.7096	10035	67	10043	53	44	83.0189
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0

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