PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85401-85450 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | * | 60.8583 | 72.0000 | 52.7027 | 87.7888 | 18 | 7 | 39 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | * | 61.1650 | 72.0000 | 53.1646 | 88.2789 | 18 | 7 | 42 | 37 | 29 | 78.3784 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | * | 62.2963 | 74.0741 | 53.7500 | 88.5057 | 20 | 7 | 43 | 37 | 29 | 78.3784 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 37.5000 | 95.8549 | 0 | 1 | 3 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | * | 42.8571 | 42.8571 | 42.8571 | 93.8416 | 3 | 4 | 9 | 12 | 8 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | * | 45.4545 | 50.0000 | 41.6667 | 93.4426 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | * | 45.4545 | 50.0000 | 41.6667 | 93.7008 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | * | 59.5493 | 55.7377 | 63.9205 | 78.6148 | 170 | 135 | 225 | 127 | 95 | 74.8031 | |
| gduggal-snapvard | INDEL | I6_15 | segdup | * | 60.2107 | 55.4286 | 65.8960 | 90.9708 | 97 | 78 | 114 | 59 | 50 | 84.7458 | |
| gduggal-snapvard | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | * | 63.3484 | 53.8462 | 76.9231 | 60.6061 | 7 | 6 | 10 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | * | * | * | 99.0871 | 98.9341 | 99.2406 | 23.7872 | 3022073 | 32560 | 3000636 | 22962 | 3691 | 16.0744 | |
| gduggal-snapvard | SNP | * | HG002complexvar | * | 97.8941 | 96.7741 | 99.0404 | 21.0357 | 730048 | 24336 | 708362 | 6863 | 2537 | 36.9663 | |
| gduggal-snapvard | SNP | * | HG002compoundhet | * | 79.9672 | 80.6669 | 79.2796 | 52.8107 | 20829 | 4992 | 20864 | 5453 | 2407 | 44.1408 | |
| gduggal-snapvard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9991 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | func_cds | * | 99.3360 | 99.0138 | 99.6603 | 29.3432 | 17971 | 179 | 17895 | 61 | 23 | 37.7049 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.6781 | 95.0672 | 73.1457 | 83.0764 | 4529 | 235 | 4497 | 1651 | 43 | 2.6045 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.3922 | 97.0358 | 90.0123 | 67.8126 | 53982 | 1649 | 53380 | 5923 | 338 | 5.7066 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.8856 | 96.9499 | 89.1483 | 74.7503 | 4164 | 131 | 4124 | 502 | 11 | 2.1912 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.0796 | 97.3480 | 87.3522 | 68.3694 | 6020 | 164 | 5912 | 856 | 19 | 2.2196 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.3065 | 97.4471 | 87.6810 | 67.1193 | 3779 | 99 | 3694 | 519 | 13 | 2.5048 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 37.8203 | 79.7927 | 24.7836 | 90.1732 | 308 | 78 | 315 | 956 | 27 | 2.8243 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.8435 | 85.3147 | 47.2815 | 88.9072 | 2318 | 399 | 2261 | 2521 | 114 | 4.5220 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 66.6372 | 86.2331 | 54.2983 | 88.7662 | 2042 | 326 | 1977 | 1664 | 92 | 5.5289 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.8096 | 94.2598 | 73.8399 | 86.2952 | 10181 | 620 | 10009 | 3546 | 141 | 3.9763 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.6921 | 93.8506 | 82.2921 | 78.6557 | 9096 | 596 | 8997 | 1936 | 140 | 7.2314 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6868 | 98.3466 | 99.0294 | 55.2658 | 16893 | 284 | 16733 | 164 | 41 | 25.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.1810 | 97.5637 | 87.3613 | 59.2270 | 17740 | 443 | 17557 | 2540 | 107 | 4.2126 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 37.3898 | 74.1259 | 25.0000 | 92.7864 | 106 | 37 | 111 | 333 | 7 | 2.1021 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.3550 | 97.1312 | 95.5910 | 44.3893 | 7144 | 211 | 7068 | 326 | 14 | 4.2945 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.1290 | 77.7778 | 23.5294 | 96.8105 | 7 | 2 | 4 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | * | 92.6283 | 96.0476 | 89.4441 | 77.2407 | 31543 | 1298 | 31148 | 3676 | 276 | 7.5082 | |
| gduggal-snapvard | SNP | * | map_l100_m1_e0 | * | 94.9349 | 96.5402 | 93.3822 | 73.4477 | 69898 | 2505 | 68917 | 4884 | 410 | 8.3948 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | * | 95.0024 | 96.5659 | 93.4887 | 74.9387 | 71424 | 2540 | 70426 | 4905 | 414 | 8.4404 | |
| ghariani-varprowl | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||