PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83401-83450 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | * | 82.8676 | 78.1544 | 88.1857 | 95.5224 | 415 | 116 | 418 | 56 | 2 | 3.5714 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 99.2416 | 16 | 8 | 16 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | * | 77.9487 | 71.6981 | 85.3933 | 98.3386 | 76 | 30 | 76 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | * | 78.8462 | 72.5664 | 86.3158 | 98.4655 | 82 | 31 | 82 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | * | 79.0476 | 72.8070 | 86.4583 | 98.4991 | 83 | 31 | 83 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | * | 81.2847 | 76.3062 | 86.9582 | 90.3597 | 2293 | 712 | 2307 | 346 | 22 | 6.3584 | |
| gduggal-snapplat | INDEL | I1_5 | segdup | * | 78.0848 | 75.0708 | 81.3508 | 96.7377 | 795 | 264 | 807 | 185 | 6 | 3.2432 | |
| gduggal-snapplat | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | * | 47.3684 | 40.9091 | 56.2500 | 86.0870 | 9 | 13 | 9 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | * | * | 41.4207 | 29.2310 | 71.0492 | 57.1777 | 7256 | 17567 | 7117 | 2900 | 649 | 22.3793 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | * | 38.3420 | 26.7738 | 67.5124 | 60.4148 | 1283 | 3509 | 1224 | 589 | 145 | 24.6180 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | * | 49.4889 | 36.1782 | 78.2955 | 43.1184 | 3175 | 5601 | 3142 | 871 | 568 | 65.2124 | |
| gduggal-snapplat | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | func_cds | * | 29.0909 | 18.6047 | 66.6667 | 47.8261 | 8 | 35 | 8 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 23.2024 | 14.2344 | 62.7119 | 73.6999 | 119 | 717 | 111 | 66 | 9 | 13.6364 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 40.2264 | 28.2838 | 69.6252 | 65.8356 | 1503 | 3811 | 1412 | 616 | 90 | 14.6104 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 38.1445 | 26.9663 | 65.1515 | 73.2794 | 48 | 130 | 43 | 23 | 4 | 17.3913 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 32.1716 | 22.5989 | 55.8140 | 74.4554 | 80 | 274 | 72 | 57 | 6 | 10.5263 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 29.8082 | 20.6612 | 53.4884 | 75.0000 | 50 | 192 | 46 | 40 | 2 | 5.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.2653 | 12.1269 | 61.6162 | 73.8786 | 65 | 471 | 61 | 38 | 4 | 10.5263 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 43.9656 | 31.1283 | 74.8222 | 59.1398 | 1087 | 2405 | 1052 | 354 | 57 | 16.1017 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.2065 | 34.2838 | 75.7645 | 57.3941 | 1022 | 1959 | 991 | 317 | 53 | 16.7192 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 42.7404 | 30.1771 | 73.2258 | 61.7378 | 1176 | 2721 | 1135 | 415 | 63 | 15.1807 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.9128 | 37.3964 | 75.0227 | 61.0403 | 902 | 1510 | 826 | 275 | 49 | 17.8182 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.8218 | 9.7826 | 100.0000 | 82.0000 | 9 | 83 | 9 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 27.8246 | 18.0645 | 60.5263 | 85.0394 | 28 | 127 | 23 | 15 | 3 | 20.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 25.7297 | 17.3354 | 49.8866 | 62.4361 | 229 | 1092 | 220 | 221 | 16 | 7.2398 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 10.5305 | 5.9140 | 48.0000 | 69.1358 | 11 | 175 | 12 | 13 | 2 | 15.3846 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.1911 | 18.8995 | 75.0000 | 65.9016 | 79 | 339 | 78 | 26 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2857 | 7.6923 | 100.0000 | 80.0000 | 1 | 12 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | * | 13.9535 | 9.0909 | 30.0000 | 94.4751 | 3 | 30 | 3 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | * | 17.3913 | 10.5263 | 50.0000 | 94.3445 | 12 | 102 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | * | 17.1429 | 10.3448 | 50.0000 | 94.9192 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | * | 17.1429 | 10.3448 | 50.0000 | 95.0339 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 97.7444 | 0 | 15 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.1806 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.5839 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | * | 9.3750 | 5.6604 | 27.2727 | 96.6967 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 99.0291 | 0 | 8 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | * | 12.5000 | 7.4074 | 40.0000 | 98.1132 | 2 | 25 | 2 | 3 | 0 | 0.0000 | |