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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2401-2450 / 86044 show all
bgallagher-sentieonSNP*map_l125_m2_e1*
99.2798
99.4555
99.1048
72.9953
469452574693942470
16.5094
bgallagher-sentieonSNP*map_l150_m0_e0*
98.7085
99.1107
98.3096
80.7877
119251071192220530
14.6341
bgallagher-sentieonSNP*map_l150_m1_e0*
99.1019
99.3303
98.8746
75.7599
304042053039834661
17.6301
bgallagher-sentieonSNP*map_l150_m2_e0*
99.1151
99.3470
98.8842
77.1865
316442083163835762
17.3669
bgallagher-sentieonSNP*map_l150_m2_e1*
99.1218
99.3542
98.8904
77.2353
320022083199635962
17.2702
bgallagher-sentieonSNP*map_l250_m0_e0*
97.7220
98.4543
97.0005
93.1217
21023321026512
18.4615
bgallagher-sentieonSNP*map_l250_m1_e0*
98.3858
98.7400
98.0341
88.9251
713191713114331
21.6783
bgallagher-sentieonSNP*map_l250_m2_e0*
98.4835
98.8332
98.1363
89.4731
779392779314832
21.6216
bgallagher-sentieonSNP*map_l250_m2_e1*
98.4903
98.8356
98.1475
89.5400
789493789414932
21.4765
bgallagher-sentieonSNP*map_siren*
99.5992
99.6902
99.5084
55.5562
145775453145752720102
14.1667
bgallagher-sentieonSNP*segdup*
99.5028
99.8432
99.1647
90.1877
28023442801723612
5.0848
bgallagher-sentieonSNP*segdupwithalt*
0.0000
100.0000
00000
bgallagher-sentieonSNP*tech_badpromoters*
98.0769
97.4522
98.7097
49.3464
153415322
100.0000
bgallagher-sentieonSNPti**
99.9476
99.9680
99.9272
17.4519
208484466720847811519117
7.7024
bgallagher-sentieonSNPtiHG002complexvar*
99.9558
99.9337
99.9780
17.4939
50809933750803511253
47.3214
bgallagher-sentieonSNPtiHG002compoundhet*
99.8512
99.8226
99.8798
35.5355
1744731174452114
66.6667
bgallagher-sentieonSNPtidecoy*
0.0000
100.0000
00000
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
bgallagher-sentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7144
99.8963
99.5331
54.5778
27930292792913110
7.6336
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4759
99.4255
99.5264
47.7277
2942172942140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7634
99.8753
99.6517
47.8261
400654006140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8976
100.0000
99.7954
50.4360
24390243950
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
98.3982
97.2851
99.5370
91.0596
215621511
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3822
99.3056
99.4590
87.2487
12879128776
85.7143
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5020
99.5471
99.4570
86.4067
10995109965
83.3333
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5944
99.5794
99.6093
76.9540
6629286629266
23.0769
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8449
99.8139
99.8759
69.1925
48289482865
83.3333
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.8571
1511500
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9202
99.9202
99.9202
44.4375
62635626353
60.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4573
99.8975
99.0210
40.1856
1072111107211061
0.9434
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.8776
91.0891
96.8421
93.5065
9299233
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.9232
99.7699
29.4425
39033390291
11.1111
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.3262
80800
bgallagher-sentieonSNPtimap_l100_m0_e0*
99.2132
99.3340
99.0926
69.0197
216261452162319835
17.6768
bgallagher-sentieonSNPtimap_l100_m1_e0*
99.4715
99.5452
99.3979
64.6493
477132184770628950
17.3010
bgallagher-sentieonSNPtimap_l100_m2_e0*
99.4612
99.5466
99.3760
66.3096
487392224873230650
16.3399
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
bgallagher-sentieonSNPtimap_l125_m0_e0*
98.9758
99.2086
98.7441
75.3623
126611011265916131
19.2547
bgallagher-sentieonSNPtimap_l125_m1_e0*
99.3257
99.4273
99.2243
71.0550
291671682916322842
18.4211
bgallagher-sentieonSNPtimap_l125_m2_e0*
99.3281
99.4316
99.2249
72.6504
300861723008223542
17.8723
bgallagher-sentieonSNPtimap_l125_m2_e1*
99.3333
99.4373
99.2295
72.6907
303971723039323642
17.7966
bgallagher-sentieonSNPtimap_l150_m0_e0*
98.8263
99.0968
98.5573
80.5178
779071778811420
17.5439