PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2301-2350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9616 | 98.9247 | 98.9986 | 84.3973 | 1380 | 15 | 1384 | 14 | 4 | 28.5714 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m0_e0 | * | 97.9174 | 98.3871 | 97.4522 | 88.7253 | 305 | 5 | 306 | 8 | 2 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7373 | 98.7952 | 98.6795 | 85.8454 | 820 | 10 | 822 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e0 | * | 98.7770 | 98.8331 | 98.7209 | 87.0110 | 847 | 10 | 849 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e1 | * | 98.7952 | 98.8506 | 98.7400 | 87.1353 | 860 | 10 | 862 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7192 | 97.1591 | 98.2857 | 91.9982 | 171 | 5 | 172 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 98.3253 | 98.4190 | 98.2318 | 89.1587 | 498 | 8 | 500 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3671 | 98.4586 | 98.2759 | 90.2666 | 511 | 8 | 513 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4039 | 98.4934 | 98.3146 | 90.3068 | 523 | 8 | 525 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 91.3043 | 87.5000 | 95.4545 | 98.1481 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 95.9350 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | * | 99.3016 | 99.2346 | 99.3688 | 80.4976 | 2982 | 23 | 2991 | 19 | 5 | 26.3158 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | * | 99.2928 | 99.3390 | 99.2467 | 94.4424 | 1052 | 7 | 1054 | 8 | 2 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | * | * | 97.2604 | 96.4589 | 98.0753 | 52.5522 | 23944 | 879 | 23949 | 470 | 434 | 92.3404 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | * | 98.3311 | 97.7254 | 98.9445 | 57.6259 | 4683 | 109 | 4687 | 50 | 49 | 98.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | * | 93.1478 | 91.3856 | 94.9793 | 37.0668 | 8020 | 756 | 8021 | 424 | 422 | 99.5283 | |
| bgallagher-sentieon | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7733 | 90.0718 | 97.7922 | 67.5516 | 753 | 83 | 753 | 17 | 15 | 88.2353 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7097 | 96.3304 | 99.1289 | 64.0826 | 5119 | 195 | 5121 | 45 | 38 | 84.4444 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2443 | 95.7292 | 98.8082 | 63.2331 | 6052 | 270 | 6052 | 73 | 63 | 86.3014 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.4541 | 162 | 16 | 162 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7246 | 98.3051 | 99.1477 | 70.1442 | 348 | 6 | 349 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9665 | 98.7603 | 99.1736 | 69.4830 | 239 | 3 | 240 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6047 | 90.1119 | 97.3790 | 63.5026 | 483 | 53 | 483 | 13 | 11 | 84.6154 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.3822 | 94.2153 | 98.6511 | 52.7880 | 3290 | 202 | 3291 | 45 | 38 | 84.4444 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.8506 | 94.9010 | 98.8819 | 51.0518 | 2829 | 152 | 2830 | 32 | 27 | 84.3750 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4850 | 94.3803 | 98.6856 | 56.4231 | 3678 | 219 | 3679 | 49 | 42 | 85.7143 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2443 | 95.7292 | 98.8082 | 63.2331 | 6052 | 270 | 6052 | 73 | 63 | 86.3014 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9904 | 94.8590 | 99.2198 | 62.4389 | 2288 | 124 | 2289 | 18 | 13 | 72.2222 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7097 | 66.3043 | 96.8254 | 60.1266 | 61 | 31 | 61 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.4480 | 151 | 4 | 152 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8611 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7043 | 98.0318 | 99.3860 | 61.8783 | 1295 | 26 | 1295 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3989 | 93.5484 | 99.4286 | 70.8333 | 174 | 12 | 174 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5204 | 99.2823 | 99.7596 | 46.4607 | 415 | 3 | 415 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 72.5000 | 11 | 2 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.3469 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.5425 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 96.4912 | 94.8276 | 98.2143 | 88.3817 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | * | 96.4912 | 94.8276 | 98.2143 | 88.6525 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.5479 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |