PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
851-900 / 86044 show all
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
98.3051
100.0000
96.6667
84.7973
8708730
0.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
94.9640
97.0588
92.9577
96.7356
6626650
0.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.9022
98.6444
99.1614
72.5547
9461394686
75.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
96.9781
96.7532
97.2039
68.0840
596205911715
88.2353
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
99.0536
100.0000
98.1250
68.1909
157015730
0.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
93.3333
91.3043
95.4545
68.1159
4244222
100.0000
astatham-gatkINDELD16_PLUSmap_l100_m0_e0*
86.2069
89.2857
83.3333
96.8051
2532550
0.0000
astatham-gatkINDELD16_PLUSmap_l100_m1_e0*
89.2655
90.8046
87.7778
94.9153
79879114
36.3636
astatham-gatkINDELD16_PLUSmap_l100_m2_e0*
89.1304
91.1111
87.2340
95.4369
82882124
33.3333
astatham-gatkINDELD16_PLUSmap_l100_m2_e1*
89.3401
90.7216
88.0000
95.2584
88988124
33.3333
astatham-gatkINDELD16_PLUSmap_l125_m0_e0*
92.3077
100.0000
85.7143
97.1074
1201220
0.0000
astatham-gatkINDELD16_PLUSmap_l125_m1_e0*
96.4286
100.0000
93.1034
96.8581
2702720
0.0000
astatham-gatkINDELD16_PLUSmap_l125_m2_e0*
94.7368
100.0000
90.0000
97.2603
2702730
0.0000
astatham-gatkINDELD16_PLUSmap_l125_m2_e1*
93.1034
96.4286
90.0000
97.3238
2712730
0.0000
astatham-gatkINDELD16_PLUSmap_l150_m0_e0*
87.5000
100.0000
77.7778
97.1787
70720
0.0000
astatham-gatkINDELD16_PLUSmap_l150_m1_e0*
93.7500
100.0000
88.2353
97.1761
1501520
0.0000
astatham-gatkINDELD16_PLUSmap_l150_m2_e0*
94.4444
100.0000
89.4737
97.3865
1701720
0.0000
astatham-gatkINDELD16_PLUSmap_l150_m2_e1*
91.8919
94.4444
89.4737
97.4255
1711720
0.0000
astatham-gatkINDELD16_PLUSmap_l250_m0_e0*
50.0000
100.0000
33.3333
97.6000
10120
0.0000
astatham-gatkINDELD16_PLUSmap_l250_m1_e0*
80.0000
100.0000
66.6667
97.5806
40420
0.0000
astatham-gatkINDELD16_PLUSmap_l250_m2_e0*
83.3333
100.0000
71.4286
97.7492
50520
0.0000
astatham-gatkINDELD16_PLUSmap_l250_m2_e1*
83.3333
100.0000
71.4286
97.7707
50520
0.0000
astatham-gatkINDELD16_PLUSmap_siren*
93.3991
94.4056
92.4138
94.9653
1358134112
18.1818
astatham-gatkINDELD16_PLUSsegdup*
90.3226
96.5517
84.8485
96.3435
56256102
20.0000
astatham-gatkINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
astatham-gatkINDELD16_PLUStech_badpromoters*
100.0000
100.0000
100.0000
42.8571
40400
astatham-gatkINDELD1_5**
99.5682
99.4433
99.6934
60.4898
145928817145983449317
70.6013
astatham-gatkINDELD1_5HG002complexvar*
99.5714
99.3825
99.7611
58.5986
32513202325677866
84.6154
astatham-gatkINDELD1_5HG002compoundhet*
96.5582
95.6110
97.5244
66.3015
1169853711700297294
98.9899
astatham-gatkINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9387
40400
astatham-gatkINDELD1_5func_cds*
100.0000
100.0000
100.0000
40.7407
159016000
astatham-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.2962
93.5743
97.0826
62.0727
37282563727112102
91.0714
astatham-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8718
1101100
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3672
99.1883
99.5468
74.2740
6390852363921291257
88.3162
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.8892
97.3753
98.4085
66.7402
74220742127
58.3333
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9166
1001000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5144
99.6757
99.3536
78.0162
153751537105
50.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8120
99.9059
99.7183
81.2335
10621106231
33.3333
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.6966
92.5757
96.9171
59.1377
223217922327167
94.3662
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.1132
10100
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.0729
97.4752
98.6779
47.9442
2007652020077269262
97.3978
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4990
98.1160
98.8851
46.7540
1791534417916202197
97.5248
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1514
97.5955
98.7136
53.8931
2171553521716283267
94.3463
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7654
98.4474
99.0855
41.1980
2415938124161223213
95.5157
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
82.3360
76.6141
88.9816
53.1299
5341635336665
98.4848
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7319
99.9289
55.1102
2529168252941812
66.6667
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100