PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85651-85700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | segdupwithalt | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.6603 | 29.2554 | 86.0104 | 46.9780 | 1497 | 3620 | 1494 | 243 | 208 | 85.5967 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.3666 | 30.7174 | 86.7262 | 43.9252 | 1460 | 3293 | 1457 | 223 | 197 | 88.3408 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 50.1080 | 34.9234 | 88.6547 | 58.7648 | 1984 | 3697 | 1977 | 253 | 213 | 84.1897 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 63.0485 | 48.1459 | 91.3123 | 63.3492 | 4025 | 4335 | 4015 | 382 | 317 | 82.9843 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 73.4052 | 61.1563 | 91.7896 | 37.5114 | 4432 | 2815 | 4416 | 395 | 339 | 85.8228 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.3896 | 5.6338 | 66.6667 | 80.6452 | 4 | 67 | 4 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.6568 | 97.6518 | 97.6619 | 52.8575 | 9939 | 239 | 9941 | 238 | 209 | 87.8151 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7755 | 59.7109 | 96.5075 | 47.3586 | 2189 | 1477 | 2183 | 79 | 55 | 69.6203 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7170 | 2.5381 | 33.3333 | 92.1875 | 5 | 192 | 5 | 10 | 7 | 70.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 80.1595 | 67.7444 | 98.1461 | 38.4977 | 901 | 429 | 900 | 17 | 15 | 88.2353 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.8819 | 93.4109 | 96.4000 | 79.4069 | 241 | 17 | 241 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m1_e0 | homalt | 95.1473 | 92.7365 | 97.6868 | 77.2562 | 549 | 43 | 549 | 13 | 2 | 15.3846 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.8904 | 94.5946 | 97.2222 | 84.3137 | 140 | 8 | 140 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.4612 | 93.4097 | 97.6048 | 81.5368 | 326 | 23 | 326 | 8 | 1 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.6522 | 93.6813 | 97.7077 | 82.5500 | 341 | 23 | 341 | 8 | 1 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | homalt | 95.6044 | 93.5484 | 97.7528 | 82.6087 | 348 | 24 | 348 | 8 | 1 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.2381 | 94.1176 | 96.3855 | 88.5675 | 80 | 5 | 80 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.8315 | 92.5439 | 97.2350 | 84.8569 | 211 | 17 | 211 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9153 | 92.5620 | 97.3913 | 85.7232 | 224 | 18 | 224 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8240 | 92.3387 | 97.4468 | 85.7230 | 229 | 19 | 229 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 97.3301 | 11 | 2 | 11 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | homalt | 93.9130 | 94.7368 | 93.1034 | 92.6582 | 54 | 3 | 54 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.1461 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.3041 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_siren | homalt | 95.7280 | 94.0068 | 97.5133 | 74.2805 | 1098 | 70 | 1098 | 28 | 6 | 21.4286 | |
| ghariani-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.1837 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | * | homalt | 74.2367 | 61.6503 | 93.2807 | 52.1893 | 3900 | 2426 | 3901 | 281 | 242 | 86.1210 | |