PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85401-85450 / 86044 show all
gduggal-snapvardINDELI6_15map_l125_m2_e1homalt
42.1053
26.6667
100.0000
82.8125
4111100
gduggal-snapvardINDELI6_15map_l150_m0_e0homalt
40.0000
25.0000
100.0000
96.2963
13100
gduggal-snapvardINDELI6_15map_l150_m1_e0homalt
44.4444
28.5714
100.0000
86.9565
25600
gduggal-snapvardINDELI6_15map_l150_m2_e0homalt
44.4444
28.5714
100.0000
88.0000
25600
gduggal-snapvardINDELI6_15map_l150_m2_e1homalt
54.5455
37.5000
100.0000
88.4615
35600
gduggal-snapvardINDELI6_15map_l250_m0_e0homalt
0.0000
100.0000
01000
gduggal-snapvardINDELI6_15map_l250_m1_e0homalt
0.0000
100.0000
03000
gduggal-snapvardINDELI6_15map_l250_m2_e0homalt
0.0000
100.0000
03000
gduggal-snapvardINDELI6_15map_l250_m2_e1homalt
0.0000
100.0000
03000
gduggal-snapvardINDELI6_15map_sirenhomalt
46.8227
31.1111
94.5946
68.9076
28623522
100.0000
gduggal-snapvardINDELI6_15segduphomalt
43.3333
27.6596
100.0000
84.9206
13341900
gduggal-snapvardINDELI6_15segdupwithalthomalt
0.0000
100.0000
00000
gduggal-snapvardINDELI6_15tech_badpromotershomalt
50.0000
33.3333
100.0000
0.0000
12100
gduggal-snapvardSNP**homalt
99.4378
98.9468
99.9337
17.0443
1167733124291158113768475
61.8490
gduggal-snapvardSNP*HG002complexvarhomalt
98.1658
96.5628
99.8230
18.7873
2786569919269038477269
56.3941
gduggal-snapvardSNP*HG002compoundhethomalt
89.8866
82.8510
98.2279
37.1566
893318497594137100
72.9927
gduggal-snapvardSNP*decoyhomalt
0.0000
0.0000
100.0000
99.9931
00200
gduggal-snapvardSNP*func_cdshomalt
99.5466
99.1259
99.9709
21.8523
691861687522
100.0000
gduggal-snapvardSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.7991
95.5378
98.0941
72.6859
16707816473212
37.5000
gduggal-snapvardSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0062
96.7177
99.3296
54.4844
195366631926113058
44.6154
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.0366
91.2990
99.0933
69.4457
1549814771530014072
51.4286
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.4271
97.3897
99.4869
56.2693
156742155184
50.0000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.4705
97.6021
99.3545
52.3611
2198542155147
50.0000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.6458
97.9754
99.3253
54.0950
135528132595
55.5556
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
81.9978
81.8182
82.1782
94.8258
902083186
33.3333
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.1125
83.1756
93.6725
88.6078
7911607555122
43.1373
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
88.9064
83.4507
95.1253
86.7650
7111416833518
51.4286
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.1492
94.2273
98.1512
80.5335
368922636106832
47.0588
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.0366
91.2990
99.0933
69.4457
1549814771530014072
51.4286
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.5819
93.2562
98.0265
65.1478
322223331796422
34.3750
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
75.0000
80.0000
70.5882
97.4627
1231250
0.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.0804
98.3246
99.8480
50.5717
5986102591395
55.5556
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3473
97.2572
99.4621
37.7380
656018564723518
51.4286
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
60.8696
51.2195
75.0000
96.2617
21202172
28.5714
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
98.2185
96.7495
99.7328
29.9465
264989261374
57.1429
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
98.9796
20100
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNP*map_l100_m0_e0homalt
97.5410
95.5077
99.6627
63.7532
11098522109323728
75.6757
gduggal-snapvardSNP*map_l100_m1_e0homalt
98.0408
96.3523
99.7895
60.4906
26018985256055441
75.9259
ghariani-varprowlINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000