PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85351-85400 / 86044 show all
gduggal-snapvardSNPtvHG002complexvarhomalt
98.0989
96.4652
99.7889
20.7946
9174933628934818993
49.2063
gduggal-snapvardSNPtvHG002compoundhethomalt
90.8698
84.7107
97.9946
41.8088
287051825415238
73.0769
gduggal-snapvardSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9902
00100
gduggal-snapvardSNPtvfunc_cdshomalt
99.2613
98.5915
99.9402
26.1484
168024167111
100.0000
gduggal-snapvardSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.1847
95.8015
98.6083
75.1972
5022249674
57.1429
gduggal-snapvardSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0218
96.6030
99.4830
58.8566
975434396225026
52.0000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.3173
97.2973
99.3590
56.7867
4681346531
33.3333
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.5839
97.8372
99.3421
60.4167
7691775552
40.0000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.7471
97.9048
99.6040
63.8511
5141150321
50.0000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
84.1837
80.4878
88.2353
95.6907
3383043
75.0000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
89.9292
85.2071
95.2055
89.4101
432754172110
47.6190
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.3824
85.7143
95.5882
88.0806
40267390188
44.4444
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.7435
93.5247
98.0701
82.9494
14019713722713
48.1481
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
96.3092
94.0011
98.7334
63.5924
16611061637217
33.3333
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
98.5149
63600
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.0133
98.1991
99.8412
55.4691
381770377263
50.0000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.1212
96.7368
99.5458
35.0221
2668902630129
75.0000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
90.9091
83.3333
100.0000
95.2830
51500
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
97.2690
95.1945
99.4359
31.3606
124863123474
57.1429
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvmap_l100_m0_e0homalt
97.9071
96.0998
99.7837
64.7675
3696150369085
62.5000
gduggal-snapvardSNPtvmap_l100_m1_e0homalt
98.2646
96.7599
99.8168
61.4274
875029387181610
62.5000
gduggal-snapvardSNPtvmap_l100_m2_e0homalt
98.2526
96.7441
99.8089
63.7260
891430088811711
64.7059
gduggal-snapvardSNPtvmap_l100_m2_e1homalt
98.2305
96.6996
99.8105
63.7425
899530789561711
64.7059
gduggal-snapvardSNPtvmap_l125_m0_e0homalt
97.4654
95.2274
99.8111
72.0544
2115106211443
75.0000
gduggal-snapvardSNPtvmap_l125_m1_e0homalt
98.0991
96.4505
99.8050
66.5043
56522085629118
72.7273
gduggal-snapvardSNPtvmap_l125_m2_e0homalt
98.0723
96.4102
99.7927
68.8173
58012165778129
75.0000
gduggal-snapvardSNPtvmap_l125_m2_e1homalt
98.0309
96.3286
99.7943
68.8883
58512235823129
75.0000
gduggal-snapvardSNPtvmap_l150_m0_e0homalt
96.9441
94.3524
99.6823
78.3751
125375125543
75.0000
gduggal-snapvardSNPtvmap_l150_m1_e0homalt
97.7764
95.8439
99.7884
71.1912
3782164377286
75.0000
gduggal-snapvardSNPtvmap_l150_m2_e0homalt
97.7892
95.8854
99.7701
73.2819
3915168390697
77.7778
gduggal-snapvardSNPtvmap_l150_m2_e1homalt
97.7665
95.8394
99.7728
73.2888
3962172395297
77.7778
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
21.2121
11.8644
100.0000
33.3333
7521200
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELI6_15map_l100_m0_e0homalt
15.3846
8.3333
100.0000
80.9524
111800
gduggal-snapvardINDELI6_15map_l100_m1_e0homalt
42.8571
27.2727
100.0000
74.0741
9242100
gduggal-snapvardINDELI6_15map_l100_m2_e0homalt
42.8571
27.2727
100.0000
75.5814
9242100
gduggal-snapvardINDELI6_15map_l100_m2_e1homalt
42.8571
27.2727
100.0000
75.5814
9242100
gduggal-snapvardINDELI6_15map_l125_m0_e0homalt
28.5714
16.6667
100.0000
86.4865
15500
gduggal-snapvardINDELI6_15map_l125_m1_e0homalt
42.1053
26.6667
100.0000
84.2105
411900
gduggal-snapvardINDELI6_15map_l125_m2_e0homalt
42.1053
26.6667
100.0000
83.8710
4111000