PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-34 / 34
anovak-vgSNP***
98.4545
98.3357
98.5736
21.3437
30037965083829873484322718700
43.2600
astatham-gatkSNP***
99.5934
99.2091
99.9807
19.0428
3030461241583030315584162
27.7397
asubramanian-gatkSNP***
98.9379
97.9985
99.8954
21.0150
29934806113929933433133150
4.7877
bgallagher-sentieonSNP***
99.9296
99.9673
99.8919
18.9151
305362099930534713303195
5.9037
cchapple-customSNP***
99.8448
99.8832
99.8063
20.8246
3051052356730495575917726
12.2697
ciseli-customSNP***
97.7648
98.8356
96.7169
21.5138
301906535569300607210204111838
11.6012
ckim-dragenSNP***
99.8268
99.9524
99.7015
21.8489
3053166145330537319143533
5.8296
ckim-gatkSNP***
99.6466
99.4788
99.8150
23.5123
30386981592130385525632250
4.4389
ckim-isaacSNP***
98.5357
97.1616
99.9494
15.9907
29679308670429685841504880
58.5106
ckim-vqsrSNP***
99.2866
98.6511
99.9303
23.6837
30134154120430132722101144
6.8539
dgrover-gatkSNP***
99.9456
99.9631
99.9282
19.2565
3053492112730533432195207
9.4305
egarrison-hhgaSNP***
99.8985
99.8365
99.9607
18.3304
3049624499530496771199305
25.4379
eyeh-varpipeSNP***
99.4670
99.9638
98.9751
20.3427
30535271107299971231063471
1.5163
gduggal-bwafbSNP***
99.7820
99.8619
99.7021
21.9848
3050417421730506569115775
8.5025
gduggal-bwaplatSNP***
98.8646
98.0471
99.6958
26.6546
299496559654299552391391314
14.3779
gduggal-bwavardSNP***
99.3249
99.0431
99.6083
22.9016
3025405292293004827118173477
29.4237
gduggal-snapfbSNP***
99.2501
99.8026
98.7037
23.6262
304860460303049548400492047
5.1112
gduggal-snapplatSNP***
99.0030
98.6815
99.3266
26.8746
3014360402743015151204422819
13.7902
gduggal-snapvardSNP***
99.0871
98.9341
99.2406
23.7872
3022073325603000636229623691
16.0744
ghariani-varprowlSNP***
99.3496
99.8685
98.8361
25.2137
305057740163051086359302639
7.3448
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
hfeng-pmm3SNP***
99.9548
99.9339
99.9756
18.3516
30526012018305246074476
10.2151
jlack-gatkSNP***
99.7200
99.9393
99.5016
23.6335
30527651854305261215290548
3.5840
jli-customSNP***
99.9382
99.9603
99.9160
18.2994
3053407121230533022566212
8.2619
jmaeng-gatkSNP***
99.6144
99.4608
99.7686
23.7289
30381471647230380017046253
3.5907
jpowers-varprowlSNP***
99.5004
99.5447
99.4561
23.3348
3040706139083041157166322670
16.0534
ltrigg-rtg1SNP***
99.8754
99.8921
99.8587
17.5113
3051330329630515184317267
6.1849
ltrigg-rtg2SNP***
99.8749
99.8935
99.8562
17.0058
3051374325230515314395283
6.4391
mlin-fermikitSNP***
98.8629
98.2311
99.5029
16.3803
30006025403230005271499012200
81.3876
ndellapenna-hhgaSNP***
99.8818
99.8118
99.9519
18.1821
3048871574830489191468467
31.8120
qzeng-customSNP***
99.4966
99.2413
99.7533
22.5407
303145823176301298374521530
20.5314
raldana-dualsentieonSNP***
99.9260
99.9131
99.9389
18.4181
305196526543051826186797
5.1955
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433