PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9195
97.9163
99.9436
71.6321
5310113531433
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3985
98.9521
99.8489
49.8485
132214132220
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2357
98.7135
99.7636
51.8223
8441184420
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.6872
99.3763
100.0000
45.8664
478347800
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6549
99.6320
99.6779
64.1892
21668216670
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5315
99.5674
99.4957
65.2740
13816138170
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8726
99.7455
100.0000
62.0339
784278400
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6530
99.7222
99.5839
69.2078
14364143660
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4536
99.5624
99.3450
70.1434
910491060
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.3913
525052500
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.2414
93.9394
94.5455
90.9836
1551015692
22.2222
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
95.0515
92.7419
97.4790
91.0526
115911632
66.6667
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
70.0000
00060
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.6667
4014000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7580
97.6793
97.8367
88.4863
13893314023110
32.2581
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.0755
97.3713
98.7899
89.5852
88924898119
81.8182
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
17.3913
100.0000
9.5238
78.5714
202190
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0067
98.2249
99.8012
86.1050
498950211
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1886
98.1028
98.2745
88.1406
1241241253228
36.3636
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.4861
97.9849
98.9924
89.4091
7781678687
87.5000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
23.5294
100.0000
13.3333
80.7692
202130
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0342
98.2942
99.7854
85.3275
461846511
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.9023
98.7458
99.0593
82.5203
40945241073910
25.6410
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8815
98.4877
99.2784
83.9265
2605402614199
47.3684
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
24.0000
100.0000
13.6364
80.3571
303190
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5646
99.1989
99.9329
79.3662
148612149011
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9134
97.0765
98.7647
80.5287
8866267887511113
11.7117
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
60.0000
100.0000
42.8571
84.3049
15015200
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9195
97.9163
99.9436
71.6321
5310113531433
100.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.1035
98.9086
99.2991
66.9100
48035348173412
35.2941
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.1727
98.8666
99.4807
69.4042
30533530651611
68.7500
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
10.5263
100.0000
5.5556
80.4348
101170
0.0000