PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-50 / 86044 show all
anovak-vgINDEL***
70.4960
69.7491
71.2591
54.1876
24031510422724860610027081436
81.2167
anovak-vgINDEL**het
69.4961
61.0200
80.7068
58.0873
118460756731311723135716629
53.0312
anovak-vgINDEL**hetalt
0.0000
25.9341
0.0000
0.0000
654518692000
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
anovak-vgINDEL*HG002complexvar*
72.8155
71.0364
74.6860
53.4026
5465422284560691900416560
87.1395
anovak-vgINDEL*HG002complexvarhet
72.0208
60.7851
88.3522
57.0408
28090181223012939722361
59.4411
anovak-vgINDEL*HG002complexvarhetalt
0.0000
29.8459
0.0000
0.0000
11042595000
anovak-vgINDEL*HG002complexvarhomalt
75.7278
94.2021
63.3115
49.8629
254601567259401503214199
94.4585
anovak-vgINDEL*HG002compoundhet*
36.9041
30.6776
46.3018
57.6241
919120769158131833913521
73.7281
anovak-vgINDEL*HG002compoundhethet
52.7411
50.6595
55.0010
54.9014
2074202013874113517959
70.1172
anovak-vgINDEL*HG002compoundhethetalt
0.0000
25.9095
0.0000
0.0000
652418656000
anovak-vgINDEL*HG002compoundhethomalt
34.7177
86.4431
21.7206
63.7894
59393193969885562
79.5936
anovak-vgINDEL*decoy*
67.7419
60.0000
77.7778
99.9553
64720
0.0000
anovak-vgINDEL*decoyhet
72.7273
66.6667
80.0000
99.9643
42410
0.0000
anovak-vgINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDEL*decoyhomalt
70.5882
66.6667
75.0000
99.9345
21310
0.0000
anovak-vgINDEL*func_cds*
81.4334
80.2247
82.6790
38.5816
357883587554
72.0000
anovak-vgINDEL*func_cdshet
74.7761
69.6262
80.7487
43.8438
149651513619
52.7778
anovak-vgINDEL*func_cdshetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgINDEL*func_cdshomalt
87.7119
91.5929
84.1463
33.8710
207192073935
89.7436
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.8320
33.8727
48.3358
55.3849
34126661419744863438
76.6384
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.7905
46.8317
46.7493
53.6445
18922148309235222706
76.8313
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
13.6768
0.0000
0.0000
5233301000
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
48.9231
45.1335
53.4074
60.1656
99712121105964732
75.9336
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
56.0510
55.0000
57.1429
99.4951
119865
83.3333
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
70.5882
75.0000
66.6667
99.4646
93633
100.0000
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
40.0000
40.0000
40.0000
99.5421
23232
66.6667
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
72.8701
70.9790
74.8646
68.2103
6703927410796292673520426
76.4017
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
75.7760
77.8397
73.8189
67.4300
3757410697519361842013343
72.4376
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
28.1118
0.0000
0.0000
433411083000
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
79.2304
81.6976
76.9079
69.6191
2513156302769383157083
85.1834
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.1592
62.6870
61.6403
53.4558
1910711373300861872313632
72.8088
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
25.3457
0.0000
0.0000
423412471000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
65.4735
66.2226
64.7412
60.6352
1203061361347273376068
82.7041
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
63.6599
61.2245
66.2970
66.6238
13208361375699438
62.6609
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
63.0461
57.4841
69.7998
69.3027
722534802347171
49.2795
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
23.9521
0.0000
0.0000
40127000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
68.3076
76.1255
61.9459
62.5658
558175573352267
75.8523
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
53.3898
52.9412
53.8462
99.5165
98765
83.3333
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.0377
70.0000
62.5000
99.5059
73533
100.0000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
44.4444
50.0000
40.0000
99.5327
22232
66.6667
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
73.8753
73.0416
74.7283
69.3443
3739138038501302863
66.2826
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
72.7114
67.5333
78.7495
70.8829
20269742179588262
44.5578
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
30.9013
0.0000
0.0000
72161000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
77.6220
87.0095
70.0629
67.3332
16412451671714601
84.1737
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.9189
77.3944
78.4506
71.4753
28048192876790545
68.9873
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
76.8360
71.2348
83.3933
72.7285
15236151622323129
39.9381