PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-50 / 86044 show all
rpoplin-dv42SNPtvsegduphetalt
100.0000
100.0000
100.0000
98.3834
70700
rpoplin-dv42SNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.8333
40400
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.0392
10100
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
58.3333
50500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.3125
30300
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
60.0000
1001000
rpoplin-dv42SNPtisegduphetalt
100.0000
100.0000
100.0000
99.2857
20200
rpoplin-dv42SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
93.5897
50500
rpoplin-dv42SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
93.5897
50500
rpoplin-dv42SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.6508
40400
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
95.5556
20200
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
92.5156
3503600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
60600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
91.6667
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
90.9774
1201200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.4545
20200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
90.5333
6907100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
90.9774
1201200
rpoplin-dv42SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.8947
80800
rpoplin-dv42SNP*segduphetalt
100.0000
100.0000
100.0000
98.3834
70700
rpoplin-dv42SNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.8333
40400
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.8254
20200
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
58.3333
50500
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.3125
30300
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100