PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
egarrison-hhgaSNPtitech_badpromotershet
100.0000
100.0000
100.0000
46.9880
4404400
egarrison-hhgaSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
46.0526
4104100
egarrison-hhgaSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
egarrison-hhgaSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.8356
17040170400
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7536
1501500
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1538
30300
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7536
1501500
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
97.7778
10100
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.1429
10100
egarrison-hhgaSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.8776
30300
egarrison-hhgaSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.8528
70700
egarrison-hhgaSNPtvtech_badpromotershomalt
100.0000
100.0000
100.0000
54.6512
3903900
eyeh-varpipeINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.7080
10200
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.4286
10100
eyeh-varpipeINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9901
10600
eyeh-varpipeINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9726
10500
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.6089
10300
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
100.0000
100.0000
100.0000
99.3080
10200
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1429
10100
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1429
10100
eyeh-varpipeINDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
98.1132
10100
eyeh-varpipeINDELD16_PLUSmap_l250_m0_e0het
100.0000
100.0000
100.0000
96.2963
10100
eyeh-varpipeINDELD16_PLUSmap_l250_m1_e0het
100.0000
100.0000
100.0000
93.3333
30300
eyeh-varpipeINDELD16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
93.7500
30300
eyeh-varpipeINDELD16_PLUSmap_l250_m2_e1het
100.0000
100.0000
100.0000
93.7500
30300
eyeh-varpipeINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.8141
20700
eyeh-varpipeINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6732
10100
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7013
10100
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.5075
701500
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.5915
10100
eyeh-varpipeINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.2441
30800
eyeh-varpipeINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.3333
20400
eyeh-varpipeINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9794
10300
eyeh-varpipeINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9761
10200
eyeh-varpipeINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
52.9412
80800
eyeh-varpipeINDELD6_15decoy*
100.0000
100.0000
100.0000
99.7758
10200
eyeh-varpipeINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1525
10100