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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
201-250 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | func_cds | * | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 37.1500 | 27.9605 | 55.3371 | 59.9550 | 595 | 1533 | 591 | 477 | 362 | 75.8910 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 94.4444 | 1 | 3 | 1 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 57.0334 | 48.7504 | 68.7072 | 56.9745 | 1736 | 1825 | 1706 | 777 | 550 | 70.7851 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 51.5950 | 42.4685 | 65.7179 | 59.2998 | 2123 | 2876 | 2101 | 1096 | 789 | 71.9891 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 60.9623 | 54.4271 | 69.2810 | 72.5314 | 209 | 175 | 212 | 94 | 51 | 54.2553 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 25.0000 | 0.0000 | 96.2264 | 1 | 3 | 0 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.1540 | 77.3058 | 85.4054 | 60.1508 | 637 | 187 | 632 | 108 | 59 | 54.6296 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6984 | 90.4665 | 95.0431 | 49.8920 | 446 | 47 | 441 | 23 | 12 | 52.1739 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.4802 | 22.9894 | 49.9162 | 51.5028 | 303 | 1015 | 298 | 299 | 239 | 79.9331 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 43.4211 | 35.2336 | 56.5657 | 54.1348 | 1131 | 2079 | 1120 | 860 | 639 | 74.3023 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 49.8333 | 42.9384 | 59.3660 | 55.4700 | 830 | 1103 | 824 | 564 | 402 | 71.2766 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 51.7017 | 43.2260 | 64.3120 | 56.8434 | 1758 | 2309 | 1748 | 970 | 697 | 71.8557 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 51.5950 | 42.4685 | 65.7179 | 59.2998 | 2123 | 2876 | 2101 | 1096 | 789 | 71.9891 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.4202 | 43.0804 | 60.7748 | 52.4011 | 772 | 1020 | 753 | 486 | 332 | 68.3128 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6562 | 36.7647 | 76.4706 | 96.4620 | 25 | 43 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.7848 | 41.9187 | 67.7249 | 51.1628 | 402 | 557 | 384 | 183 | 140 | 76.5027 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.5368 | 18.6688 | 45.8678 | 43.7209 | 115 | 501 | 111 | 131 | 110 | 83.9695 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 54.9995 | 46.4968 | 67.3077 | 47.2081 | 73 | 84 | 70 | 34 | 26 | 76.4706 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.8913 | 21.7391 | 47.8261 | 39.4737 | 10 | 36 | 11 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | * | 52.3810 | 39.2857 | 78.5714 | 92.5532 | 11 | 17 | 11 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | * | 52.2205 | 37.9310 | 83.7838 | 88.2166 | 33 | 54 | 31 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | * | 52.2346 | 37.7778 | 84.6154 | 88.4956 | 34 | 56 | 33 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | * | 50.6599 | 36.0825 | 85.0000 | 88.3721 | 35 | 62 | 34 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m0_e0 | * | 50.0000 | 41.6667 | 62.5000 | 94.2857 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | * | 65.2174 | 55.5556 | 78.9474 | 91.3242 | 15 | 12 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | * | 65.5738 | 55.5556 | 80.0000 | 91.3420 | 15 | 12 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | * | 64.1711 | 53.5714 | 80.0000 | 91.5612 | 15 | 13 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.6102 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l150_m1_e0 | * | 66.6667 | 53.3333 | 88.8889 | 94.7977 | 8 | 7 | 8 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.6667 | 52.9412 | 90.0000 | 94.4751 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e1 | * | 64.2857 | 50.0000 | 90.0000 | 94.5946 | 9 | 9 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 50.0000 | 66.6667 | 97.2477 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 96.5217 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 96.6387 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | * | 55.8559 | 43.3566 | 78.4810 | 82.5221 | 62 | 81 | 62 | 17 | 14 | 82.3529 | |
| anovak-vg | INDEL | D16_PLUS | segdup | * | 76.0605 | 68.9655 | 84.7826 | 91.5129 | 40 | 18 | 39 | 7 | 4 | 57.1429 | |
| anovak-vg | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | * | 33.3333 | 25.0000 | 50.0000 | 50.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | * | * | 90.2130 | 89.2296 | 91.2183 | 56.6455 | 130940 | 15805 | 132532 | 12759 | 9010 | 70.6168 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | * | 91.1523 | 90.0107 | 92.3232 | 54.8532 | 29447 | 3268 | 29789 | 2477 | 1674 | 67.5818 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | * | 38.6407 | 34.4667 | 43.9649 | 65.5035 | 4217 | 8018 | 4859 | 6193 | 4434 | 71.5970 | |
| anovak-vg | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9469 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | * | 92.1630 | 92.4528 | 91.8750 | 37.7432 | 147 | 12 | 147 | 13 | 9 | 69.2308 | |