PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85951-86000 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.4819 | 100.0000 | 98.9691 | 42.0896 | 192 | 0 | 192 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 21 | 0 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.6552 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 32 | 0 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 91.8033 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.5833 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.5185 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.5882 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.8586 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.3303 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.1482 | 18 | 0 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.0673 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8980 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.9657 | 22 | 0 | 22 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6360 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.6903 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.1002 | 22 | 0 | 22 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.7955 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7826 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 91.6129 | 50 | 0 | 50 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.1139 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002compoundhet | homalt | 11.1111 | 100.0000 | 5.8824 | 76.6055 | 3 | 0 | 3 | 48 | 47 | 97.9167 | |
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.0909 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.1127 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4427 | 100.0000 | 93.1298 | 86.0341 | 122 | 0 | 122 | 9 | 9 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 18 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.8170 | 35 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.9138 | 35 | 0 | 35 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 74.4986 | 89 | 0 | 89 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 73.3668 | 53 | 0 | 53 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2222 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.1961 | 100.0000 | 82.1429 | 88.0342 | 23 | 0 | 23 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6522 | 100.0000 | 91.6667 | 87.3684 | 22 | 0 | 22 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9130 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9952 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | het | 76.1905 | 100.0000 | 61.5385 | 51.8519 | 8 | 0 | 8 | 5 | 5 | 100.0000 | |