PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
ckim-isaacINDELI6_15map_l150_m2_e1hetalt
80.0000
66.6667
100.0000
93.1818
21300
ckim-isaacINDELI6_15map_l150_m2_e1homalt
22.2222
12.5000
100.0000
97.8723
17100
ckim-isaacINDELI6_15map_l250_m1_e0*
25.0000
14.2857
100.0000
99.4220
16100
ckim-isaacINDELI6_15map_l250_m1_e0homalt
50.0000
33.3333
100.0000
95.4545
12100
ckim-isaacINDELI6_15map_l250_m2_e0*
40.0000
25.0000
100.0000
99.0099
26200
ckim-isaacINDELI6_15map_l250_m2_e0het
33.3333
20.0000
100.0000
99.3548
14100
ckim-isaacINDELI6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
95.8333
12100
ckim-isaacINDELI6_15map_l250_m2_e1*
40.0000
25.0000
100.0000
99.0431
26200
ckim-isaacINDELI6_15map_l250_m2_e1het
33.3333
20.0000
100.0000
99.3631
14100
ckim-isaacINDELI6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
96.1538
12100
ckim-isaacINDELI6_15segduphetalt
91.5663
84.4444
100.0000
88.0126
3873800
ckim-isaacINDELI6_15segduphomalt
88.0952
78.7234
100.0000
87.9870
37103700
ckim-isaacINDELI6_15tech_badpromoters*
96.0000
92.3077
100.0000
47.8261
1211200
ckim-isaacINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
50.0000
70700
ckim-isaacINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
25.0000
30300
ckim-isaacINDELI6_15tech_badpromotershomalt
80.0000
66.6667
100.0000
60.0000
21200
ckim-isaacSNP**hetalt
96.5558
93.3410
100.0000
30.0946
8135881300
ckim-isaacSNP*HG002complexvarhetalt
93.4708
87.7419
100.0000
29.5337
2723827200
ckim-isaacSNP*HG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNP*func_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-isaacSNP*func_cdshomalt
99.3365
98.6818
100.0000
18.1191
688792688700
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
57.1429
1211200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
92.4242
1051000
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
64.2857
50500
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
28.5714
50500
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_51to200*
80.0000
66.6667
100.0000
95.0820
63600
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_51to200het
83.3333
71.4286
100.0000
94.9495
52500
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
95.0000
11100
ckim-isaacSNP*map_l100_m0_e0hetalt
60.8696
43.7500
100.0000
79.4118
79700
ckim-isaacSNP*map_l100_m1_e0hetalt
71.8750
56.0976
100.0000
75.7895
23182300
ckim-isaacSNP*map_l100_m2_e0hetalt
72.7273
57.1429
100.0000
77.3585
24182400
ckim-isaacSNP*map_l100_m2_e1hetalt
73.5294
58.1395
100.0000
76.6355
25182500
ckim-isaacSNP*map_l125_m0_e0hetalt
61.5385
44.4444
100.0000
85.7143
45400
ckim-isaacSNP*map_l125_m1_e0hetalt
66.6667
50.0000
100.0000
78.5714
15151500
ckim-isaacSNP*map_l125_m2_e0hetalt
66.6667
50.0000
100.0000
81.0127
15151500
ckim-isaacSNP*map_l125_m2_e1hetalt
66.6667
50.0000
100.0000
81.0127
15151500
ckim-isaacSNP*map_l150_m1_e0hetalt
57.1429
40.0000
100.0000
85.7143
812800
ckim-isaacSNP*map_l150_m2_e0hetalt
57.1429
40.0000
100.0000
87.0968
812800
ckim-isaacSNP*map_l150_m2_e1hetalt
57.1429
40.0000
100.0000
87.3016
812800
ckim-isaacSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
22200
ckim-isaacSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNP*map_l250_m2_e1hetalt
57.1429
40.0000
100.0000
93.7500
23200