PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
rpoplin-dv42SNPtimap_l125_m2_e1homalt
99.5496
99.3367
99.7633
68.9111
1138276113822726
96.2963
rpoplin-dv42SNPtimap_l150_m0_e0*
98.6405
98.3081
98.9751
78.2174
772813377268057
71.2500
rpoplin-dv42SNPtimap_l150_m0_e0het
98.4858
98.2735
98.6990
79.8611
50098850076644
66.6667
rpoplin-dv42SNPtimap_l150_m0_e0hetalt
85.7143
100.0000
75.0000
92.8571
30311
100.0000
rpoplin-dv42SNPtimap_l150_m0_e0homalt
98.9435
98.3702
99.5236
74.2304
27164527161312
92.3077
rpoplin-dv42SNPtimap_l150_m1_e0*
99.1152
98.8890
99.3424
73.3921
194932191948912991
70.5426
rpoplin-dv42SNPtimap_l150_m1_e0het
98.9713
98.7874
99.1558
74.5638
122201501221610467
64.4231
rpoplin-dv42SNPtimap_l150_m1_e0hetalt
93.7500
100.0000
88.2353
85.0877
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m1_e0homalt
99.3702
99.0583
99.6841
71.0853
72586972582322
95.6522
rpoplin-dv42SNPtimap_l150_m2_e0*
99.1376
98.9177
99.3584
75.0879
202902222028613193
70.9924
rpoplin-dv42SNPtimap_l150_m2_e0het
99.0005
98.8200
99.1816
75.9652
127291521272510568
64.7619
rpoplin-dv42SNPtimap_l150_m2_e0hetalt
93.7500
100.0000
88.2353
87.3134
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e0homalt
99.3810
99.0809
99.6830
73.3835
75467075462423
95.8333
rpoplin-dv42SNPtimap_l150_m2_e1*
99.1367
98.9191
99.3552
75.1649
204992242049513393
69.9248
rpoplin-dv42SNPtimap_l150_m2_e1het
98.9954
98.8167
99.1746
76.0502
128611541285710768
63.5514
rpoplin-dv42SNPtimap_l150_m2_e1hetalt
93.7500
100.0000
88.2353
87.5912
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e1homalt
99.3872
99.0901
99.6862
73.4415
76237076232423
95.8333
rpoplin-dv42SNPtimap_l250_m0_e0*
97.8365
97.3723
98.3051
92.1397
13343613342313
56.5217
rpoplin-dv42SNPtimap_l250_m0_e0het
97.5322
97.3233
97.7419
92.5223
909259092111
52.3810
rpoplin-dv42SNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtimap_l250_m0_e0homalt
98.4936
97.4771
99.5316
91.1005
4251142522
100.0000
rpoplin-dv42SNPtimap_l250_m1_e0*
98.4440
98.1000
98.7904
87.6879
44928744925536
65.4545
rpoplin-dv42SNPtimap_l250_m1_e0het
98.2113
98.0458
98.3773
88.2203
29105829104829
60.4167
rpoplin-dv42SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.6508
40400
rpoplin-dv42SNPtimap_l250_m1_e0homalt
98.8722
98.1954
99.5584
86.5187
157829157877
100.0000
rpoplin-dv42SNPtimap_l250_m2_e0*
98.5577
98.2428
98.8746
88.2672
49208849205637
66.0714
rpoplin-dv42SNPtimap_l250_m2_e0het
98.3531
98.1868
98.5199
88.5673
31955931954829
60.4167
rpoplin-dv42SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
93.5897
50500
rpoplin-dv42SNPtimap_l250_m2_e0homalt
98.9359
98.3419
99.5370
87.6280
172029172088
100.0000
rpoplin-dv42SNPtimap_l250_m2_e1*
98.5375
98.2270
98.8501
88.3448
49869049865838
65.5172
rpoplin-dv42SNPtimap_l250_m2_e1het
98.3298
98.1510
98.5093
88.6573
32386132384929
59.1837
rpoplin-dv42SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
93.5897
50500
rpoplin-dv42SNPtimap_l250_m2_e1homalt
98.9217
98.3634
99.4863
87.6793
174329174399
100.0000
rpoplin-dv42SNPtimap_siren*
99.6562
99.5227
99.7902
53.3616
9987647999868210138
65.7143
rpoplin-dv42SNPtimap_sirenhet
99.5664
99.3973
99.7362
53.8516
620063766199716494
57.3171
rpoplin-dv42SNPtimap_sirenhetalt
98.2759
100.0000
96.6102
78.7004
5705722
100.0000
rpoplin-dv42SNPtimap_sirenhomalt
99.8060
99.7283
99.8838
52.4445
37813103378144442
95.4545
rpoplin-dv42SNPtisegdup*
99.7773
99.7799
99.7748
89.3733
1949443194924419
43.1818
rpoplin-dv42SNPtisegduphet
99.7339
99.7007
99.7671
89.8249
119943611992283
10.7143
rpoplin-dv42SNPtisegduphetalt
100.0000
100.0000
100.0000
99.2857
20200
rpoplin-dv42SNPtisegduphomalt
99.8469
99.9067
99.7871
88.5156
7498774981616
100.0000
rpoplin-dv42SNPtisegdupwithalt*
0.0000
100.0000
00000
rpoplin-dv42SNPtisegdupwithalthet
0.0000
100.0000
00000
rpoplin-dv42SNPtisegdupwithalthetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtisegdupwithalthomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtitech_badpromoters*
98.8235
98.8235
98.8235
45.1613
8418411
100.0000
rpoplin-dv42SNPtitech_badpromotershet
98.8506
97.7273
100.0000
44.1558
4314300
rpoplin-dv42SNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
46.1538
4104111
100.0000
rpoplin-dv42SNPtv**
99.9512
99.9420
99.9604
21.8980
969128562969027384163
42.4479