PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1-50 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | * | * | 70.4960 | 69.7491 | 71.2591 | 54.1876 | 240315 | 104227 | 248606 | 100270 | 81436 | 81.2167 | |
| anovak-vg | INDEL | * | * | het | 69.4961 | 61.0200 | 80.7068 | 58.0873 | 118460 | 75673 | 131172 | 31357 | 16629 | 53.0312 | |
| anovak-vg | INDEL | * | * | hetalt | 0.0000 | 25.9341 | 0.0000 | 0.0000 | 6545 | 18692 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | * | homalt | 74.8405 | 92.1212 | 63.0190 | 50.1342 | 115310 | 9862 | 117434 | 68913 | 64807 | 94.0418 | |
| anovak-vg | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 20.0000 | 90.1961 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 25.0000 | 90.2439 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C1_5 | * | * | 51.8752 | 80.0000 | 38.3817 | 91.6130 | 8 | 2 | 185 | 297 | 25 | 8.4175 | |
| anovak-vg | INDEL | C1_5 | * | het | 40.9055 | 77.7778 | 27.7500 | 90.6933 | 7 | 2 | 111 | 289 | 20 | 6.9204 | |
| anovak-vg | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 90.2439 | 94.3409 | 0 | 0 | 74 | 8 | 5 | 62.5000 | |
| anovak-vg | INDEL | C6_15 | * | * | 35.2941 | 100.0000 | 21.4286 | 89.7623 | 7 | 0 | 12 | 44 | 5 | 11.3636 | |
| anovak-vg | INDEL | C6_15 | * | het | 31.2500 | 100.0000 | 18.5185 | 88.2096 | 7 | 0 | 10 | 44 | 5 | 11.3636 | |
| anovak-vg | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7528 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | * | * | 64.9199 | 56.1321 | 76.9701 | 52.6377 | 3808 | 2976 | 3780 | 1131 | 815 | 72.0601 | |
| anovak-vg | INDEL | D16_PLUS | * | het | 72.6101 | 70.2754 | 75.1054 | 49.0881 | 2220 | 939 | 2495 | 827 | 601 | 72.6723 | |
| anovak-vg | INDEL | D16_PLUS | * | hetalt | 0.0000 | 16.4511 | 0.0000 | 0.0000 | 318 | 1615 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | * | homalt | 77.8556 | 75.0591 | 80.8685 | 58.6629 | 1270 | 422 | 1285 | 304 | 214 | 70.3947 | |
| anovak-vg | INDEL | D1_5 | * | * | 90.2130 | 89.2296 | 91.2183 | 56.6455 | 130940 | 15805 | 132532 | 12759 | 9010 | 70.6168 | |
| anovak-vg | INDEL | D1_5 | * | het | 92.1131 | 94.4127 | 89.9228 | 55.4448 | 82681 | 4893 | 86771 | 9724 | 6623 | 68.1098 | |
| anovak-vg | INDEL | D1_5 | * | hetalt | 0.0000 | 29.0971 | 0.0000 | 0.0000 | 2981 | 7264 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | * | homalt | 93.1579 | 92.5438 | 93.7802 | 58.8390 | 45278 | 3648 | 45761 | 3035 | 2387 | 78.6491 | |
| anovak-vg | INDEL | D6_15 | * | * | 67.2100 | 61.4480 | 74.1646 | 48.0426 | 16033 | 10059 | 16202 | 5644 | 4329 | 76.7009 | |
| anovak-vg | INDEL | D6_15 | * | het | 76.4820 | 81.7202 | 71.8750 | 45.3746 | 9473 | 2119 | 11523 | 4509 | 3518 | 78.0217 | |
| anovak-vg | INDEL | D6_15 | * | hetalt | 0.0000 | 24.6269 | 0.0000 | 0.0000 | 2013 | 6161 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| anovak-vg | INDEL | I16_PLUS | * | * | 32.9342 | 25.0588 | 48.0286 | 39.2493 | 1598 | 4779 | 1547 | 1674 | 1112 | 66.4277 | |
| anovak-vg | INDEL | I16_PLUS | * | het | 20.3076 | 12.3988 | 56.0773 | 46.0104 | 337 | 2381 | 406 | 318 | 57 | 17.9245 | |
| anovak-vg | INDEL | I16_PLUS | * | hetalt | 0.0000 | 7.1020 | 0.0000 | 0.0000 | 149 | 1949 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | * | homalt | 55.6761 | 71.2364 | 45.6948 | 36.9604 | 1112 | 449 | 1141 | 1356 | 1055 | 77.8024 | |
| anovak-vg | INDEL | I1_5 | * | * | 54.8287 | 54.8578 | 54.7996 | 53.4671 | 82651 | 68013 | 84844 | 69982 | 59671 | 85.2662 | |
| anovak-vg | INDEL | I1_5 | * | het | 38.2803 | 26.6836 | 67.7044 | 67.2836 | 21091 | 57950 | 25553 | 12189 | 4021 | 32.9888 | |
| anovak-vg | INDEL | I1_5 | * | hetalt | 0.0000 | 31.2282 | 0.0000 | 0.0000 | 3496 | 7699 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | * | homalt | 66.3251 | 96.0879 | 50.6397 | 46.1343 | 58064 | 2364 | 59291 | 57793 | 55650 | 96.2919 | |
| anovak-vg | INDEL | I6_15 | * | * | 44.4248 | 38.7222 | 52.0973 | 38.6048 | 9612 | 15211 | 9514 | 8748 | 6474 | 74.0055 | |
| anovak-vg | INDEL | I6_15 | * | het | 35.7228 | 26.3530 | 55.4313 | 44.2246 | 2644 | 7389 | 4312 | 3467 | 1789 | 51.6008 | |
| anovak-vg | INDEL | I6_15 | * | hetalt | 0.0000 | 22.5588 | 0.0000 | 0.0000 | 1929 | 6622 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | * | homalt | 61.4755 | 80.7661 | 49.6232 | 33.6435 | 5039 | 1200 | 5202 | 5281 | 4685 | 88.7143 | |
| anovak-vg | SNP | * | * | * | 98.4545 | 98.3357 | 98.5736 | 21.3437 | 3003796 | 50838 | 2987348 | 43227 | 18700 | 43.2600 | |
| anovak-vg | SNP | * | * | het | 98.0636 | 98.0936 | 98.0337 | 24.0083 | 1837883 | 35718 | 1828909 | 36684 | 13178 | 35.9230 | |
| anovak-vg | SNP | * | * | hetalt | 0.0000 | 14.4661 | 0.0000 | 0.0000 | 126 | 745 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | * | homalt | 99.1091 | 98.7819 | 99.4384 | 16.6644 | 1165787 | 14375 | 1158439 | 6543 | 5522 | 84.3955 | |
| anovak-vg | SNP | ti | * | * | 98.4812 | 98.2960 | 98.6672 | 19.8346 | 2049980 | 35538 | 2043729 | 27607 | 12786 | 46.3143 | |
| anovak-vg | SNP | ti | * | het | 98.0963 | 98.0413 | 98.1515 | 22.3908 | 1256788 | 25109 | 1253632 | 23610 | 9204 | 38.9835 | |
| anovak-vg | SNP | ti | * | hetalt | 0.0000 | 15.8076 | 0.0000 | 0.0000 | 92 | 490 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | * | homalt | 99.1281 | 98.7623 | 99.4967 | 15.3503 | 793100 | 9939 | 790097 | 3997 | 3582 | 89.6172 | |
| anovak-vg | SNP | tv | * | * | 98.3366 | 98.3717 | 98.3016 | 24.5602 | 953908 | 15790 | 951566 | 16441 | 6526 | 39.6934 | |
| anovak-vg | SNP | tv | * | het | 97.9352 | 98.2070 | 97.6649 | 27.4537 | 581095 | 10609 | 580225 | 13873 | 4566 | 32.9129 | |